PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco022474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 130aa MW: 13767.5 Da PI: 5.0205 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 81.2 | 1.6e-25 | 37 | 95 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k y++++d++++ ++swse +nsfv++d++ fa+++LpkyFkh+n++SFvRQLn+Y Aco022474.1 37 FLTKCYDMVDDPATDATVSWSEGNNSFVIWDPHAFARDLLPKYFKHNNISSFVRQLNTY 95 9********************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.9E-27 | 29 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.0E-23 | 33 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.58E-24 | 35 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-21 | 37 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-15 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-15 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-15 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MEAENSSSAG GGGGGGGGGG GGGGGGAAPQ PPVVPPFLTK CYDMVDDPAT DATVSWSEGN 60 NSFVIWDPHA FARDLLPKYF KHNNISSFVR QLNTYVRFRL FPLLLLLAYG MWMDAFCCSE 120 LEYRGVKPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-21 | 25 | 95 | 17 | 87 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 25 | 95 | 17 | 87 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 25 | 95 | 17 | 87 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM664812 | 2e-33 | KM664812.1 Ananas bracteatus clone 49806 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020097240.1 | 3e-63 | heat shock factor protein HSF8-like | ||||
Refseq | XP_020097248.1 | 3e-63 | heat shock factor protein HSF8-like | ||||
Swissprot | P41151 | 1e-31 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | A0A199UZ01 | 5e-62 | A0A199UZ01_ANACO; Heat stress transcription factor A-1 (Fragment) | ||||
STRING | XP_008775686.1 | 9e-35 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 2e-31 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco022474.1 |
Publications ? help Back to Top | |||
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