PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022106.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 514aa    MW: 55417.9 Da    PI: 7.1727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022106.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30270328259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  Aco022106.1 270 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLVTTYEGNHNHP 328
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32254330IPR003657WRKY domain
SuperFamilySSF1182901.44E-27262330IPR003657WRKY domain
PROSITE profilePS5081129.62264330IPR003657WRKY domain
SMARTSM007743.6E-36269329IPR003657WRKY domain
PfamPF031063.2E-26271328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MERCKEMILL HSGRFSRRDS HGGGDDVDRA CNKIKEVDFF SESRERKLDE AGGLRDCRGG  60
DGSLACGDAG DINTGLALTV HSVGAPTAEE EEDKPNNKMH LITIQDELNR LGHENRRLRG  120
MLDQLTRNYS ALYNQFLLVM QQKANETQHI QKENQTDPSN PVRLSAQQFL DPRPTSLQET  180
NEHTNGDEEE HSPSLKNSSD GPSEREINIP FNRRKISVEE GPLDQQISPS WRDNNSPRQA  240
QERSTDSMHE LPCRKARVSV RARSDAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMAIG  300
CPVRKQVQRC AEDKTVLVTT YEGNHNHPLP PAAAAMANTT SAAATMLLSG TANTTRDSSL  360
MMGSASAAAP LFGHPLVPFA SSLATLSASA PFPTITLDLT QAPLPPAAGT PLHLLQRGAS  420
HGHHPTTSSF PLAPLSMYLP HAKVGQRHHS VAETVSAAIT SDPNFTAALA AAISSIMGAP  480
RGDGAANNGS AAAPHGVPGS PQFPQSCTTF STN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21256332176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6654702e-48KM665470.1 Ananas bracteatus clone 50622 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087114.10.0probable WRKY transcription factor 47
TrEMBLA0A199V8X60.0A0A199V8X6_ANACO; WRKY transcription factor 6
STRINGEOX954651e-137(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.15e-62WRKY family protein