PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021988.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 395aa    MW: 44212 Da    PI: 6.4208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021988.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10198240754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  + E++RR+r+ +++e L++l+P++     +K + a+i   +++YI++L
  Aco021988.1 198 KKEKQRRERLSEKYELLKSLIPNR-----TKDDRATIISDTMDYIREL 240
                  57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-6197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7198240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.51E-10199255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-8200244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-9200240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYHHHPELYP PHEHIPMEGS SSEFIGPSHT ATMNFSDLAL MGSGQNSSSN SSNGTSAAAA  60
ELDFHRQFGL DVVGKPEMAP HLMHFPENLF FAEIPPETAS VGSTVLYDPS VQLDLVHHQP  120
CQVREIYTAN NINNNDDVSL PQDYSGFIHG SSVNGHFVGG VMEEVYGLGQ QLESPHLNTR  180
RQKGGMRQKG LSFNGVEKKE KQRRERLSEK YELLKSLIPN RTKDDRATII SDTMDYIREL  240
GRTVNELKLL VEKKRRKKER GKEVLIGEEL VGDMESSSVK PFIDEGEHHA SNGSLRSSWL  300
QRKSKETFVD VRIVEDEVTI KITQRKRMIS CLLTASRILD ELQLELLHLS GGIIGDCHIY  360
MFNTKIPEGS SVYASAVAKK LIEVMDVQFP PQTC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256KKRRK
2252257KKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086074.10.0transcription factor TIP2-like
TrEMBLA0A199V9910.0A0A199V991_ANACO; Transcription factor TIP2
STRINGXP_008793418.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-41bHLH family protein