PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco021879.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 465aa MW: 51494.7 Da PI: 5.014

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021879.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.7	5e-35	120	212	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k y++++d++++ ++swse +nsfv++d++ fa+++LpkyFkh+n++SFvRQLn+YgF+kv++++ eF+++ F +++k+ll++i Aco021879.1 120 FLTKCYDMVDDPATDATVSWSEGNNSFVIWDPHAFARDLLPKYFKHNNISSFVRQLNTYGFHKVDHDR---------YEFANEGFLRDQKHLLKTIV 207 9***************************************************************99.........78**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Aco021879.1 208 RRKPS 212 *9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.8E-37	112	204	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.1E-56	116	209	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.67E-34	117	209	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.5E-30	120	209	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	120	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	158	170	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	159	183	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	171	183	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MVRVATYFAM TFGAFLFWQS MDRLHVWIAL HQDEKLKMPL TRSQAAGAAE AADAEEVGTS 60 VTSGSSGIHE LQDQLAKLTD LVAQQAAAAR HVAMEAENSS SAGGGGGGGA APQPPVVPPF 120 LTKCYDMVDD PATDATVSWS EGNNSFVIWD PHAFARDLLP KYFKHNNISS FVRQLNTYGF 180 HKVDHDRYEF ANEGFLRDQK HLLKTIVRRK PSHNAAQHPP SQAKNTSVNA CIEVGKFGLE 240 EEIERLKRDK TVLMQELVKL RLHQQSTDHE LQSLRQRLQG MEQNQQQMMS FLAMAVQSPA 300 FLAKLVQKSG NSNRWKTEAN KKRRLPALEQ GNNITYPESS SSDGQIIRYQ PLVTESFNSS 360 MPPSVPNSHI SEQLQNMANS ANNLSECGDF ILPDYLEQLL ASPPLDNGVG PDPESLGILD 420 LSIDDFDFSE QDIQMEVAQD MVPDEINGGS QSRPEMDHVF LEIS*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MVRVATYFAM TFGAFLFWQS MDRLHVWIAL HQDEKLKMPL TRSQAAGAAE AADAEEVGTS  60
VTSGSSGIHE LQDQLAKLTD LVAQQAAAAR HVAMEAENSS SAGGGGGGGA APQPPVVPPF  120
LTKCYDMVDD PATDATVSWS EGNNSFVIWD PHAFARDLLP KYFKHNNISS FVRQLNTYGF  180
HKVDHDRYEF ANEGFLRDQK HLLKTIVRRK PSHNAAQHPP SQAKNTSVNA CIEVGKFGLE  240
EEIERLKRDK TVLMQELVKL RLHQQSTDHE LQSLRQRLQG MEQNQQQMMS FLAMAVQSPA  300
FLAKLVQKSG NSNRWKTEAN KKRRLPALEQ GNNITYPESS SSDGQIIRYQ PLVTESFNSS  360
MPPSVPNSHI SEQLQNMANS ANNLSECGDF ILPDYLEQLL ASPPLDNGVG PDPESLGILD  420
LSIDDFDFSE QDIQMEVAQD MVPDEINGGS QSRPEMDHVF LEIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-27	108	209	17	129	Heat shock factor protein 1
5d5v_B	1e-27	108	209	17	129	Heat shock factor protein 1
5d5v_D	1e-27	108	209	17	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM664812	7e-88	KM664812.1 Ananas bracteatus clone 49806 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111652.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-108	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A199UZ01	0.0	A0A199UZ01_ANACO; Heat stress transcription factor A-1 (Fragment)
STRING	XP_008775686.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-100	heat shock transcription factor A1D

Link Out ? help Back to Top
Phytozome	Aco021879.1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]