PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021658.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 381aa    MW: 42096.7 Da    PI: 10.3834
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021658.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.15.3e-1420124186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...................rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                  +W++ e+ aL+ea  ++  +l+rg+l++++W+ev++++                     r   r+ +qCk++++ l+k+yk +k++  + +   +s +
  Aco021658.1  20 CWSEGETSALVEAWGDRYLELNRGNLRQKHWQEVADAVnsrrgaavsagagggggggGGRRPPRTDVQCKNRIDTLKKKYKVEKARIADSAGALHSPW 117
                  7*****************************************************9887777799**********************99998777789* PP

     trihelix  80 pyfdqle 86 
                  p++ +l+
  Aco021658.1 118 PFYARLD 124
                  ****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2418126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGRETRGPP NPALPYREDC WSEGETSALV EAWGDRYLEL NRGNLRQKHW QEVADAVNSR  60
RGAAVSAGAG GGGGGGGGRR PPRTDVQCKN RIDTLKKKYK VEKARIADSA GALHSPWPFY  120
ARLDALIGSS TPPAAPHSSA SASASASAAP KKPSSSPPFA LPLPFHRKGF RKAAAAAAAA  180
AADDDEDEES GSSSRSLSSR SKLGKRRRGR ERDDGDGIRE LARAIERFAE IYERVEGAKQ  240
RQMMELEKQR MEFAKGLEFQ RMQIFVDSQV QLEKIKRSKR ADAGEPIRSV AALHFLSTPR  300
KLEASDWCIV LCVDVEGSRK EDAKRKSVTE VLRWRIKKMG ERLQEFRCMT MFLMKGHCKS  360
QRGRQEGLVI LRFGWEAEGS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105844.10.0trihelix transcription factor ASIL2-like
RefseqXP_020105845.10.0trihelix transcription factor ASIL2-like
RefseqXP_020105846.10.0trihelix transcription factor ASIL2-like
RefseqXP_020105847.10.0trihelix transcription factor ASIL2-like
TrEMBLM0SWZ51e-108M0SWZ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09160_0011e-109(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-39sequence-specific DNA binding transcription factors