PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021314.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 323aa    MW: 34516.6 Da    PI: 6.8446
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021314.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16238275136
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                  C++C+ +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  Aco021314.1 238 CHHCHISAkaTPMMRRGPDGPRTLCNACGLMWANKGTM 275
                  *****88889*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.7E-11103138IPR010399Tify domain
PROSITE profilePS5132014.291103138IPR010399Tify domain
PfamPF062001.9E-11107137IPR010399Tify domain
PfamPF062031.0E-15164206IPR010402CCT domain
PROSITE profilePS5101713.334164206IPR010402CCT domain
PROSITE profilePS501149.064232289IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-13232285IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-12236287No hitNo description
CDDcd002021.23E-14237280No hitNo description
Gene3DG3DSA:3.30.50.107.9E-16237279IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440238265IPR000679Zinc finger, GATA-type
PfamPF003202.1E-14238275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGENPAHGPS DAKPYPPRRA PEPRAAVPLL PPQIDDVRGG GDAHMVAGGA AAEAHPMQRY  60
EHHNGGGDGG GMEEDEEEDH DGAMEAVAMD ADAVHDSHVM VAPTMGNNQL TLSFQGEAYV  120
FDSVSPEKVQ AVLLLLGGRE ITPGMGSVPS SSNPYNRRVN FPHRVASLMR FREKRKERNF  180
DKKIRYTVRK EVALRMQRNR GQFTSSKSKP EDSTSIASSD SSMRWGLVEG RPPSASECHH  240
CHISAKATPM MRRGPDGPRT LCNACGLMWA NKGTMRDLSK SPPVPLQTLP PEPVDGTGTA  300
AAAAVGEQQS AAITANGHDS SS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6608556e-69KM660855.1 Ananas bracteatus clone 37475 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091012.10.0GATA transcription factor 17-like
SwissprotQ5Z4U51e-113GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A199UNB80.0A0A199UNB8_ANACO; GATA transcription factor 28
STRINGXP_008811434.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-71ZIM-like 1