PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021068.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 495aa    MW: 53768.6 Da    PI: 5.5832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021068.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11299344555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  Aco021068.1 299 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 344
                  99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.35E-12292348No hitNo description
SuperFamilySSF474597.72E-17292354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.263294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-9299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDNFIDPFLS SSSWVGNATS LEAYAGNERN SSEFMTPSSH IVVNGSAEDL KIHEHNRTSS  60
IFTNGNIKYE LDKSLFSGGV ESNSTPVSFG LELDMPHSGV AISSSIESNG SEFSAFPQSL  120
TDAHSISSPS VMWPSSYVNI SSLILQRKPQ TFGLQELEND NILRNTCDEN GKFSQLENLP  180
LRFIHDKNEF HSSHLPSFTA GPQVQFTNGG SQTQEQEQNG VHKLHMPSFA SGPQMTFSNT  240
GLAQNSQQLT QSIEGNTSKL HINHSSNSQS QLAPVNENGC NGAVKPRVRA RRGQATDPHS  300
IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGATGA  360
VVPLLTDSQA ECSGNLLISS PSISATGPDF ADSQDTSSLE QEVVKLMESN VTNAMQYLQN  420
KGLCLMPIAL AAAISNQKGS NSSAIPPERR KPSLVHPETN NAAEDRANGF DDGDMRKEEV  480
AKSVNNGREL QSKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090425.10.0transcription factor bHLH133-like
RefseqXP_020090426.10.0transcription factor bHLH133-like
TrEMBLA0A199W8N50.0A0A199W8N5_ANACO; Transcription factor bHLH82
STRINGXP_008784365.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-63LJRHL1-like 3