PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021063.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 369aa    MW: 41231.6 Da    PI: 4.5258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021063.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19122171255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Aco021063.1 122 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 171
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-32122181IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22122181IPR016177DNA-binding domain
CDDcd000181.75E-32122180No hitNo description
SMARTSM003803.4E-38122185IPR001471AP2/ERF domain
PROSITE profilePS5103224.092122179IPR001471AP2/ERF domain
PfamPF008478.2E-12123171IPR001471AP2/ERF domain
PRINTSPR003671.1E-11123134IPR001471AP2/ERF domain
PRINTSPR003671.1E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCGGAIISGF IPTARSRRLA GEHRWPESKG GRRKKKNLPA NPYAAAEGEF GAEDDFEADF  60
RQFRDESGES DVDDVDVPEL ADVKPFAFES HGPFFEDGFT TLKPVEYDGP AARSTKRKRK  120
NQYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDAEARRIR GKKAKVNFPD  180
EAPPSSQKRL PKPASAKAPK VSPPQEKLNF GQPFNYLDNG EDFFSALDFV EEEEPIKKMN  240
FQSDQGSNSF GCSDFNWEND VKTPEITSGL VPTVPTINEV DESVFVEDEN PAKKMKSNPV  300
EEKTVAVEDQ SEEFSDFESY VKFLQEPYLE GGSDVSIESL LNSDVTQDMV SSVGLWSFDD  360
MPMAGSVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201211811374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6634061e-106KM663406.1 Ananas bracteatus clone 47826 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090368.10.0ethylene-responsive transcription factor 1-like
RefseqXP_020090369.10.0ethylene-responsive transcription factor 1-like
RefseqXP_020090370.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E69e-89ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A199UF790.0A0A199UF79_ANACO; Ethylene-responsive transcription factor 1
STRINGXP_008784363.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.12e-51related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]