PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020875.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 379aa    MW: 40057.6 Da    PI: 5.657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020875.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-1619114148
                      TSSS-HHHHHHHHHHHHHTTTT.................................................-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................................................tWktIartmgkgRtlkqcksrwq 45 
                      +g+WT+eEd+ll d+++q G g                                                  W++Ia +++ gRt++++k++w+
      Aco020875.1  19 KGPWTPEEDKLLTDYIQQNGDGclssrastgvaraaasggrttsaltsrgggsprtkrsssstytrssetsMWSSIATRLP-GRTDNEIKNYWN 111
                      79*******************************************************************************.************ PP

                      HHT CS
  Myb_DNA-binding  46 kyl 48 
                      ++l
      Aco020875.1 112 THL 114
                      996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.52414114IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-211741IPR009057Homeodomain-like
SMARTSM007176.7E-1518116IPR001005SANT/Myb domain
SuperFamilySSF466895.35E-1019115IPR009057Homeodomain-like
CDDcd001672.96E-821114No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2191115IPR009057Homeodomain-like
PfamPF002498.3E-791114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
GRKGSMGRAP CCDDVGLKKG PWTPEEDKLL TDYIQQNGDG CLSSRASTGV ARAAASGGRT  60
TSALTSRGGG SPRTKRSSSS TYTRSSETSM WSSIATRLPG RTDNEIKNYW NTHLRKKLLN  120
MGIDPVTHRP RADLNLLASL PNLLTVANLG NNLRSHWDIN ALRLQADAAN LAKLQVLQSL  180
LQVLTNNTAT SAPNMDLLSL LGSSSSTSLR NKQLSDLLQF RSQYEGILGS SLGLQSAITA  240
SSSLSNLELM NSLHNFQGCM ETKPINIDGG GDDAVAAPME GCSSSELGLE SNAASTNTNL  300
CSLPTSNSTP SLVSASPENC PHADPINAND GSINSPTSAP FDGWESLNLD DLNIDLGLKD  360
ILEQMSWLNT PLSAEGSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113123.11e-104transcription factor MYB39-like
TrEMBLA0A199UV650.0A0A199UV65_ANACO; Transcription factor MYB39
STRINGXP_008778716.11e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-35myb domain protein 9