PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020874.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 361aa    MW: 38721 Da    PI: 9.4872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020874.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding642.9e-203077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G+g+W+++++  g++R++k+c++rw +yl
      Aco020874.1 30 KGPWTPEEDRLLKECVEKHGNGSWRRVPKLAGLNRCGKSCRLRWTNYL 77
                     79********************************************97 PP
2Myb_DNA-binding56.27.9e-1883128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l+++++ +lG++ W++Ia++++ gRt++++k++w++++
      Aco020874.1  83 RGKFSKEEEKLIINLHSLLGNK-WSSIAARLP-GRTDNEIKNFWNTHM 128
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-252280IPR009057Homeodomain-like
PROSITE profilePS5129427.6722581IPR017930Myb domain
SuperFamilySSF466896.74E-3227124IPR009057Homeodomain-like
SMARTSM007173.7E-172979IPR001005SANT/Myb domain
PfamPF002491.8E-193077IPR001005SANT/Myb domain
CDDcd001679.39E-143277No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2781132IPR009057Homeodomain-like
SMARTSM007171.1E-1682130IPR001005SANT/Myb domain
PROSITE profilePS5129422.30282132IPR017930Myb domain
PfamPF002491.0E-1683127IPR001005SANT/Myb domain
CDDcd001677.81E-1385128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
PTSTSTKGIR RIYIGMGRAP CCNAEAGLKK GPWTPEEDRL LKECVEKHGN GSWRRVPKLA  60
GLNRCGKSCR LRWTNYLRPG IKRGKFSKEE EKLIINLHSL LGNKWSSIAA RLPGRTDNEI  120
KNFWNTHMRK KLLNIGIDPV THKPRTDLNL FASIPSLLLA ANNIGNLRSH FDNALKLQAD  180
AANLAKLQLL QGLLHVLTSG ATTTPTTTPN LDLISALMGS PQTSLCNKQY EGIMLNSNSN  240
LSGLAFMNPL NSFLNGDGAV ATVPVEGSSS SGQVGLGSNN GASATNMDLY TPLASNFTPS  300
LVSASPASCG GVNPINSSDG SIGESPTSAP FDGWESLNLD DLNTDLGWKD VLKQISWLNT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29281325108B-MYB
1gv2_A7e-29281322105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-29281322105C-Myb DNA-Binding Domain
1msf_C7e-29281322105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113123.10.0transcription factor MYB39-like
SwissprotQ9S9Z21e-79MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A199UUS50.0A0A199UUS5_ANACO; Transcription factor MYB39
STRINGEMT050071e-106(Aegilops tauschii)
STRINGXP_008778716.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-79myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]