PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco020863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 39774.1 Da PI: 4.6687 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2.1e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G g+W++ ++ g+ R++k+c++rw +yl Aco020863.1 16 KGSWTPEEDMRLIAYIHKFGHGNWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l Aco020863.1 69 RGNFTQEEEETIIKLHDLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.851 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.486 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-10 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGRGRAPCCA KIGLNKGSWT PEEDMRLIAY IHKFGHGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTQEEEETI IKLHDLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLAS 120 RDHNIKKSKQ KEATSPSSSS TSTSCSDQGG TKCDGDGPNP KPDPMNPTLE KFEIPIEHNT 180 DTWGMLVDPI SSQPEDTDTG NMRSTIHIDS TSLSVSSCSS SSNSFETNSD TSNEARGALH 240 YIEMEEDEKD PLEILEIPIE PEFWTMIEDE HARLYSQEMG PTEEFGSKGN PAASEGNESN 300 SCEVNGWLEY LEKELGLGGG PSEENQESLV GSWTGEMEGD PVSSYFQKEP SISTLTVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020095247.1 | 0.0 | myb-related protein Zm1-like | ||||
TrEMBL | A0A199VX53 | 0.0 | A0A199VX53_ANACO; Myb-related protein Zm1 | ||||
STRING | XP_008776690.1 | 1e-129 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-68 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Aco020863.1 |