PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco020850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 575aa MW: 62374.8 Da PI: 4.5915 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.3 | 1.9e-36 | 29 | 121 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sw + +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++sF +g+k+ll++i+ Aco020850.1 29 FLSKTYDMVDDPATDAVVSWGNGNNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANESFLRGQKHLLKTIN 116 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ Aco020850.1 117 RRKSS 121 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.9E-39 | 22 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-35 | 24 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-61 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-31 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-19 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MGRGGGGAAA SAAAAGPNPS LNGNAPPPFL SKTYDMVDDP ATDAVVSWGN GNNSFVVWNT 60 PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NESFLRGQKH LLKTINRRKS 120 SHPHNETPQP KSQTAACVEV GKFGLEEEIE RLKRDKNILM QELVRLRQQQ QATDQQLHTL 180 GNRLQGMEQR QQQMMSFLAK AMQSPGFLAQ FMQQNDSNKR IAAASKKRRL PKQEAGLDAG 240 SNSPDGQIVK YQPMINEAAK AMLRQILKLD GSSPPRLEQL SNSDNFSLEN FMPPSEATTF 300 DSTSSNTNSG VTLAEVPSGL SVPYVTASTG FSAICLSSAA SEIQSPIGLS DNKNSSEELR 360 DMDVLSSVPE TIPSPSPTDM SIPEFPELQD IVSEDSVVNI PGESFVGACI NPIAEVEADN 420 AVPIETDDIL YGDDEQKLPG IIDTFWEQFL ASSPISSEAV EEVELSRQEG KVVMQQRPQN 480 SNNGWDSARN MENLTEQMGL LSSDRKESYA CYAAALGIPV ATNLSLNWGS ICRAAEAGAV 540 HLASAPCAHT RACACACACV ALDLLAIDPV EVVP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-27 | 3 | 118 | 9 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-27 | 3 | 118 | 9 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-27 | 3 | 118 | 9 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM665309 | 1e-104 | KM665309.1 Ananas bracteatus clone 50408b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020096046.1 | 0.0 | heat stress transcription factor A-1-like isoform X1 | ||||
Swissprot | Q84T61 | 0.0 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A199UEJ3 | 0.0 | A0A199UEJ3_ANACO; Heat stress transcription factor A-1 (Fragment) | ||||
STRING | OPUNC03G38490.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5097 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-124 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Aco020850.1 |
Publications ? help Back to Top | |||
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