PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020777.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 302aa    MW: 33028.7 Da    PI: 7.8652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020777.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-1096140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+  +  ++ + ++ G+g+W++I+r+  k +t+ q+ s+ qky
      Aco020777.1  96 NWTPAQHTAFLWGLAECGKGDWRRISRHYVKAKTASQVASHAQKY 140
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121152IPR017877Myb-like domain
SMARTSM007170.0034254IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-7458IPR009057Homeodomain-like
CDDcd001673.72E-5548No hitNo description
PROSITE profilePS5129413.82188145IPR017930Myb domain
SuperFamilySSF466891.35E-1291144IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1392144IPR006447Myb domain, plants
SMARTSM007171.7E-493143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-695140IPR009057Homeodomain-like
PfamPF002495.8E-796140IPR001005SANT/Myb domain
CDDcd001671.60E-596141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNNDEWSWEQ ENAFEVALIG NQEDHADRWE RIAAGLAGKT AEQVRGRYDL LYEEISRIES  60
ALIPSPDYVD EEESSHDSGG GKRERQKNPD RKKNENWTPA QHTAFLWGLA ECGKGDWRRI  120
SRHYVKAKTA SQVASHAQKY FLRQAVEKSK KKRQSIHDFS LEMLMVAAAN KPINGNPADQ  180
THGLTNEHVA IQAANGLGGA HHPVFHTNNN GSSHGQPIHQ TGTNGNPTLN IGVMMMNGSS  240
VRQTLQRRNP PSALSTSRPA PPSAACSTPV SVSPGSFILL FGTGDPHAFP LAVTPIAYQI  300
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113273.10.0transcription factor SRM1-like
TrEMBLA0A199VFF35e-81A0A199VFF3_ANACO; Transcription factor DIVARICATA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.18e-40MYB family protein