PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco020633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 23464.3 Da PI: 8.7491 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.4e-19 | 56 | 110 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Aco020633.1 56 RKKLRLSKEQSAYLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 110 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 56 | 146 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Aco020633.1 56 RKKLRLSKEQSAYLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 146 69*************************************************************************************9.665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 28 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 52 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.85E-19 | 53 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-16 | 54 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-15 | 55 | 113 | No hit | No description |
Pfam | PF00046 | 3.7E-16 | 56 | 110 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.8E-11 | 112 | 146 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.5E-24 | 112 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MAPSESSSSE EEEEMVEGAG APTSSSPPPN SSVSFQMELS GRRGRGSDEE ENGSPRKKLR 60 LSKEQSAYLE ESFKEHSTLN PKQKIALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY 120 LKRCCETLTE ENRRLHKELA ELRALKTASN PFYMHLPATT LSMCPSCERT TSSSSASRPS 180 PFVSFFSKPP FHPLAAAHSM ASPRQPSATS * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 104 | 112 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM665940 | 1e-174 | KM665940.1 Ananas bracteatus clone 51128b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020110120.1 | 1e-148 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q6YPD0 | 8e-83 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A199W718 | 1e-104 | A0A199W718_ANACO; Homeobox-leucine zipper protein HOX27 | ||||
STRING | LPERR08G14440.1 | 7e-84 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-74 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco020633.1 |