PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco020569.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 376aa MW: 41691 Da PI: 6.6945

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco020569.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.7e-05	265	305	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Aco020569.1 265 KVRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 305 77889999*********98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-4	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-11	265	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.21E-5	265	309	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.5E-9	269	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MMDSSNHLDH HHHHYHHHQE GLHGSSLEEA AAPLIHCGGT NHGWNNQPLI WNCGDFNVLN 60 ESEVVLSNQR EFIRATYQDE PLTPPLSSIM VQDLGFQWCS NADTLMNQPN NQSHLARIKE 120 ELPTSDNFPK LNGLIKNPTY IDNYQLSEKL FLKALPQNGH NNALQPPTDD FHFGPSSLAN 180 LESGRGGFSM VLPSVNISLP SLPPLPFSGS LDMDLQALLA STKLSRSFFA PPFNSMAPLL 240 KEDPIFYGPP HVQEAVHGPF NNNHKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY 300 IKFLQEQVKT LSVPYMRPSN NKKLRTTQGA SNEEKNEPKL DLRSRGLCLV PLSCTSYVTN 360 ENGGMWSPSN YRGSA*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MMDSSNHLDH HHHHYHHHQE GLHGSSLEEA AAPLIHCGGT NHGWNNQPLI WNCGDFNVLN  60
ESEVVLSNQR EFIRATYQDE PLTPPLSSIM VQDLGFQWCS NADTLMNQPN NQSHLARIKE  120
ELPTSDNFPK LNGLIKNPTY IDNYQLSEKL FLKALPQNGH NNALQPPTDD FHFGPSSLAN  180
LESGRGGFSM VLPSVNISLP SLPPLPFSGS LDMDLQALLA STKLSRSFFA PPFNSMAPLL  240
KEDPIFYGPP HVQEAVHGPF NNNHKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY  300
IKFLQEQVKT LSVPYMRPSN NKKLRTTQGA SNEEKNEPKL DLRSRGLCLV PLSCTSYVTN  360
ENGGMWSPSN YRGSA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096979.1	0.0	transcription factor bHLH110-like
Refseq	XP_020096980.1	0.0	transcription factor bHLH110-like
TrEMBL	A0A2H3YAU9	1e-117	A0A2H3YAU9_PHODC; transcription factor bHLH110
STRING	XP_008795968.1	1e-118	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	5e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco020569.1