PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco020381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28209.2 Da PI: 6.8435 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 122 | 164 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++YIk+L Aco020381.1 122 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYIKEL 164 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.408 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-16 | 119 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-13 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.69E-5 | 122 | 164 | No hit | No description |
Pfam | PF00010 | 4.2E-10 | 122 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 122 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00229 | 220 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MSELLFCSEG TARLNCFGGP QFSPEPNFDC LSEVCSPFAA AGLCGSSAPP AAAAAAAAAA 60 HAAIHEEMSC GGASGGGRNI CKAEQKQSAG TPEPLMLAAS SCLERKNARP KKADGLPSKN 120 LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY IKELMARIKA LQEEAEAESD 180 PRNRPNQLGA LKDQLNPSET TLMRSSTKFD VERREGDTHV EVCCAAKPGL LLSMVSTLDA 240 LGLEIHQCVA SCFSDFGMQA SCLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 130 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092114.1 | 0.0 | transcription factor bHLH61-like | ||||
Swissprot | Q9LSL1 | 1e-55 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A199UPK9 | 1e-172 | A0A199UPK9_ANACO; Transcription factor bHLH93 | ||||
STRING | XP_008806159.1 | 8e-82 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-57 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Aco020381.1 |
Publications ? help Back to Top | |||
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