PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020309.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CO-like
Protein Properties Length: 426aa    MW: 45484.4 Da    PI: 5.2984
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020309.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.5e-081961338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                 +r C+ + + ++++fC  ++ +lC+ C  + H+        H+
  Aco020309.1 19 ARACDGCLRRRARWFCAADDAFLCQACDASVHSAnplasrhHR 61
                 578*****************************65777777554 PP
2CCT66.86.1e-23358401144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  Aco020309.1 358 REARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 401
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2391764IPR000315B-box-type zinc finger
SMARTSM003367.0E-91764IPR000315B-box-type zinc finger
PfamPF006433.3E-61960IPR000315B-box-type zinc finger
CDDcd000216.64E-102064No hitNo description
PfamPF062031.2E-17358400IPR010402CCT domain
PROSITE profilePS5101716.033358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNTKEKQRAA SAAVGARTAR ACDGCLRRRA RWFCAADDAF LCQACDASVH SANPLASRHH  60
RLRLKTATSS SSLAADAATP PPARTALDAG EPPTWLHGFK RKARTPRGKP MSAIKEETTV  120
VPDLEAEEKA EEAEEQLLYQ VPIFDPLLAE FCSPSPLLPT PLEDAKPAAQ PIDPFESASA  180
AAAASSDGLP GFREVSDLDV AEFAADMESL LGGGLEEDSF SLHELGLMDS EVKEEEADVD  240
AAAAAGETEI CREPMDVKFD CSAEEEAAKA TAVVSSVSEG EVTVVAKKKM ILTLDYEAVM  300
AEWSCKGCSP WTGGERPQLG TDDCWPEFAG MWGGDGKGAA QHRDPAAAAA AAAVGGGREA  360
RVTRYREKRR TRLFAKKIRY EVRKLNAEKR PRMKGRFVKR AAFPAIAAAV TAAVPAIPRG  420
PPFPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368384RRTRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6627970.0KM662797.1 Ananas bracteatus clone 46790b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100463.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A199W0U40.0A0A199W0U4_ANACO; Zinc finger protein CONSTANS-LIKE 16
STRINGXP_008775153.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-51B-box type zinc finger protein with CCT domain