PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco019948.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 591aa MW: 65893 Da PI: 5.4208

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco019948.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	520	568	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q+G g+W+ I r + + Rt ++k++w+++l Aco019948.1 520 QWTLSEVIKLVDGVSQYGVGRWTEIKRLLFsasTYRTSVDLKDKWRNLL 568 6**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.523	513	572	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-11	514	570	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.26E-15	515	570	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-9	517	570	IPR001005	SANT/Myb domain
CDD	cd11660	4.58E-19	519	569	No hit	No description
Pfam	PF00249	1.7E-6	520	568	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MPGSDTNMLR TDWDLVTLRV ASDGIDSGKS DDGLTSQKSD DFFLFFPVRP CDLYFLDSMN 60 MLEVQRENCK NPAARYSVEN IWTNPSASLN HLTNKFARIQ GGSFVPASGD DIMEVEQLLA 120 EPQIQKDLID DISKMSSEGF ENCLVVGEFA CYAGYSDQKT DLGILDLDTE QAGNAGSKYE 180 FVDSILHEVD GGNLNMPYNI PCVCPNYILD TGLAESSQMD FSSDSGTHPR NLNSECKTEG 240 LERNMSNIDT SDCSHAIIPF PAAKCDQDTT FLENMSIDEL HDAFRGMFGR DTHVKDKHWL 300 KRRILFGLEN LAEIDHVSSS LLEFDPCSNE QQDELIWMPR SSLPEGLCIP FTKISDSSPL 360 VDGIPENDEY AGQVAHAKHL TEVMKIESGF SSTGEKESAQ IPAKRLRKPT RRYIEETYEL 420 KTRCCSGKLK AAISSSRGVL IPVPDGVHVR RGRPRKSNNV MGDINIGNKQ QTQLSMASIA 480 PRAVSTSQLS DSESQNDVSD DCGSNTRRDK GGARRKHHRQ WTLSEVIKLV DGVSQYGVGR 540 WTEIKRLLFS ASTYRTSVDL KDKWRNLLRA SGAQLHYRKK VRVLLRPLFG *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MPGSDTNMLR TDWDLVTLRV ASDGIDSGKS DDGLTSQKSD DFFLFFPVRP CDLYFLDSMN  60
MLEVQRENCK NPAARYSVEN IWTNPSASLN HLTNKFARIQ GGSFVPASGD DIMEVEQLLA  120
EPQIQKDLID DISKMSSEGF ENCLVVGEFA CYAGYSDQKT DLGILDLDTE QAGNAGSKYE  180
FVDSILHEVD GGNLNMPYNI PCVCPNYILD TGLAESSQMD FSSDSGTHPR NLNSECKTEG  240
LERNMSNIDT SDCSHAIIPF PAAKCDQDTT FLENMSIDEL HDAFRGMFGR DTHVKDKHWL  300
KRRILFGLEN LAEIDHVSSS LLEFDPCSNE QQDELIWMPR SSLPEGLCIP FTKISDSSPL  360
VDGIPENDEY AGQVAHAKHL TEVMKIESGF SSTGEKESAQ IPAKRLRKPT RRYIEETYEL  420
KTRCCSGKLK AAISSSRGVL IPVPDGVHVR RGRPRKSNNV MGDINIGNKQ QTQLSMASIA  480
PRAVSTSQLS DSESQNDVSD DCGSNTRRDK GGARRKHHRQ WTLSEVIKLV DGVSQYGVGR  540
WTEIKRLLFS ASTYRTSVDL KDKWRNLLRA SGAQLHYRKK VRVLLRPLFG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	449	455	RRGRPRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093795.1	0.0	uncharacterized protein LOC109713918 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6966	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-45	TRF-like 6

Link Out ? help Back to Top
Phytozome	Aco019948.1