PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco019945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 1399aa MW: 155582 Da PI: 6.3207 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00077 | 1366 | 1392 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg +F+ s++ rH r+ H Aco019945.1 1366 YECKvaGCGLTFRYISDFSRHRRKtgH 1392 89*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 2.8E-13 | 15 | 55 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.398 | 16 | 57 | IPR003349 | JmjN domain |
Pfam | PF02375 | 2.1E-13 | 17 | 50 | IPR003349 | JmjN domain |
SMART | SM00558 | 1.4E-43 | 214 | 383 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 6.87E-26 | 215 | 381 | No hit | No description |
PROSITE profile | PS51184 | 33.316 | 217 | 383 | IPR003347 | JmjC domain |
Pfam | PF02373 | 1.3E-35 | 247 | 366 | IPR003347 | JmjC domain |
SMART | SM00355 | 23 | 1283 | 1305 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.45E-5 | 1305 | 1343 | No hit | No description |
SMART | SM00355 | 2.8 | 1306 | 1330 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.51 | 1306 | 1335 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1308 | 1330 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 1312 | 1336 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.531 | 1336 | 1365 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 1336 | 1360 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-9 | 1337 | 1360 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1338 | 1360 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.48E-10 | 1346 | 1388 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-10 | 1361 | 1389 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.473 | 1366 | 1392 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 1366 | 1392 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1368 | 1392 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1399 aa Download sequence Send to blast |
MSDPEIPSWL RSLPRAPEYR PTETEFADPI AFISRIEREA AAFGICKVIP PLPKPSKRFV 60 LANLNRSLSK SPDLSSSAAA AAPTTRHQEL GTRRARTPVP FHKQVWQSGE LYSVEQFEAK 120 SKAFARAQLG GFKEVTPLLV ESLFWKAAAE KPIYVEYAND VPGSGFAAPE EPFKYYTYRR 180 RRRKREFHQE KIQEPMCPLP VGSDVESTGS AGWKLSNSPW NLQVIARSPG SLTRFMPDEV 240 PGVTSPMVYI AMLFSWFAWH VEDHELHSLN FLHMGAPKTW YAIPGDHAAA LEEIVRVQGY 300 GGNVDRLAAL AMLGGKTTLL SPEVLVASGI PCCRLVQNPG EFVVTFPRAY HIGFSHGFNC 360 GEAANFATPQ WLKFAKDAAV RRAAMNYLPM LSHQQLLYML TVSFISRVPG ELLPGVRTSR 420 LRDRKKEERE FLIKRAFLHD MMNENQLLCS LHAKESTMGA VLWEPDLLPS SCLVPHERMV 480 DGDSAMEMIQ CKLKNSKPLE NVHEGTDHLA SIQSQNILSV KTQINACDAE CSNSKEETIN 540 YEDAEGEADE EDLPFGLRID SGSLACVACG ILGYPFMAIL QPSEKALNGL SPVNCEESTQ 600 KIEVSECTSQ PSLASIIKKF DSAKESSLNH VEARDQETSD GDKARIGHQS LEGNTCRISS 660 SQIDSPDGRK QGCSTAIFEH PINQLSHQND SSSPSRIGIV STEDDISNMN ISGEKAQTDA 720 DRLLGAGVGQ CDEVTKWNTH NGFLRPRIFC LQHALEIEEL LQSKGSAHVL IICHSDYLTI 780 KALAMSIAEE IDVQLDCEDI PLQNASPSDM HLINISIDDE EHEEDGKDWS SSLGVNLQYR 840 AKLRKQSSAK EQLALSLGGI FSDPAPVSVV SNLKWLCKKS RTPCKVVGTS LPRSHLHKDT 900 NKFGRSHCYY ENVDEENMNN LYAVPITIAE HLQINQLGLS GQSVSSSHEV THSLNSQGSP 960 VDDNTDFVSG GGELEIHSDK SVNTVSLSNP MSSESDISYY NIPILARFDI PEKTTKEYSL 1020 NRKHDNVENL EVKEKTMRLE DESLQVEETK ILDEMNSKLD GPQSAKLDCE SSLSAVSIAE 1080 NTQENSWAEI PDSEGNHAET LVLEESLSAP VLSLNASDIL LEVVDEERQC DAALAKESLA 1140 LDDAALNEIH HSTFKTTVVD NAEAKDNSEM LQKAQLTNVV KASTEVCASF EAVVRSGKAT 1200 RDIIHYVRRK NKRKREEEQH KGDSSYSCIG FIRSPCEGLR PRSGRNIPLE SDTPVVPKKV 1260 MKAVKKPQIS TVQGGKNRVE GQFSCDLEGC RMRFRTRREL SLHKQNRCTL EGCGKRFSSH 1320 NYAARHQCVH IDDRPLKCPW KGCRMTFKWA WARTEHVRVH TGERPYECKV AGCGLTFRYI 1380 SDFSRHRRKT GHYVSASV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 2e-72 | 9 | 397 | 8 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 2e-72 | 9 | 397 | 8 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 184 | RRRRRKR |
2 | 1207 | 1213 | RRKNKRK |
3 | 1208 | 1215 | RKNKRKRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093944.1 | 0.0 | lysine-specific demethylase SE14 | ||||
TrEMBL | A0A199W7Q3 | 0.0 | A0A199W7Q3_ANACO; Lysine-specific demethylase SE14 | ||||
STRING | Si033886m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco019945.1 |