PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco019856.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 354aa MW: 37336.7 Da PI: 6.3945

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco019856.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.7e-14	142	188	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Aco019856.1 142 KSHSEAERRRRERINAHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 188 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	3.92E-6	48	55	No hit	No description
PROSITE profile	PS50888	16.774	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-11	142	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	143	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-15	143	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-13	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-4	152	191	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.0E-4	226	275	No hit	No description
CDD	cd04873	6.96E-5	226	270	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
GGGGGGGGEG EGFAWSIPSM HHHHHHHQIS SFQNPLFHSL PPLPPPPPPP PPPPPPPPTF 60 YGDLYARRAS AALQFAYDGG GIGSSSSDPF GLAGLYMGPE ALVRTGGLVS SSSSPFNIGL 120 HRELGKMTAQ EIMDAKALAA SKSHSEAERR RRERINAHLA KLRSLLPSTT KTDKASLLAE 180 VIQHVKELKR QMSEIAEESA PLPTESDELS VDAASDDEGK LVVRASLCCD DRSDLLPDLI 240 KTLKALRLRT LKAEITTLGG RVKNVLVVTG DTDTDNDNDN DSAASASASA SAADDPQPPP 300 PPPQQQSLAS IQDALRAVME HRAASAEETT SAGGGVKRQR TTNLSSILEH RSI*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

GGGGGGGGEG EGFAWSIPSM HHHHHHHQIS SFQNPLFHSL PPLPPPPPPP PPPPPPPPTF  60
YGDLYARRAS AALQFAYDGG GIGSSSSDPF GLAGLYMGPE ALVRTGGLVS SSSSPFNIGL  120
HRELGKMTAQ EIMDAKALAA SKSHSEAERR RRERINAHLA KLRSLLPSTT KTDKASLLAE  180
VIQHVKELKR QMSEIAEESA PLPTESDELS VDAASDDEGK LVVRASLCCD DRSDLLPDLI  240
KTLKALRLRT LKAEITTLGG RVKNVLVVTG DTDTDNDNDN DSAASASASA SAADDPQPPP  300
PPPQQQSLAS IQDALRAVME HRAASAEETT SAGGGVKRQR TTNLSSILEH RSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	152	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104234.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	4e-79	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A199VQK8	0.0	A0A199VQK8_ANACO; Transcription factor bHLH30
STRING	XP_008809828.1	1e-118	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	9e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco019856.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]