PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco019297.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 291aa MW: 31398.8 Da PI: 5.4223

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco019297.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.4e-15	119	163	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r + k+Rt+ q+ s+ qky Aco019297.1 119 AWTEDEHRRFLLGLEEHGKGDWRSISRNFVKTRTPTQVASHAQKY 163 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.6	8	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.29E-5	12	76	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.529	12	69	IPR017877	Myb-like domain
CDD	cd00167	0.00929	45	69	No hit	No description
PROSITE profile	PS51294	18.252	112	168	IPR017930	Myb domain
SuperFamily	SSF46689	2.92E-17	114	169	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	116	166	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.8E-16	116	166	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.8E-11	117	162	IPR009057	Homeodomain-like
CDD	cd00167	3.53E-10	119	164	No hit	No description
Pfam	PF00249	2.5E-12	119	163	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDAEESSSSF CWSWDEEKAF ENAVAAEAAA AAAAAELEER GGEWRWGEIA AAVPGKTPGE 60 VERHYRLLVE DVERIELGWV PLPEYVGESE DSGEDDGGGN GKRGGRGSKG DVERRKGVAW 120 TEDEHRRFLL GLEEHGKGDW RSISRNFVKT RTPTQVASHA QKYFIRLKSM NKERRRTSIH 180 DITTTGNADG SGPQGPITGE TNGPTTPNNK PAKQPSQDPA CPPGVGLYGS TLGQPTLGQP 240 FAAPFISFAC PPVDQQMTFR MGPPISGSVV TSVPLNIATM TYHMPHTSAH *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666786	1e-36	KM666786.1 Ananas bracteatus clone 52176 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083709.1	0.0	transcription factor SRM1-like
Swissprot	Q9FNN6	3e-81	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A199VRP2	1e-157	A0A199VRP2_ANACO; Transcription factor DIVARICATA
STRING	Gorai.013G067600.1	8e-96	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6376	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-66	MYB family protein

Link Out ? help Back to Top
Phytozome	Aco019297.1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]