PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco019059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LFY | ||||||||
Protein Properties | Length: 167aa MW: 17965 Da PI: 8.1407 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 113.3 | 3.5e-35 | 66 | 166 | 184 | 283 |
FLO_LFY 184 ekkkaskkkqkrkkkkelkse.ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280 + ++ s +k+krk++ + + + + +eeeee e+ee +g+++ f+vtepgevar+kknGLDYLf+LyeqCr fLlqvq++ake+G+kcPtk Aco019059.1 66 QCTEGSCSKTKRKRSPQGNYAeHGLEEEEEEMEEEEVKGRREWRAWWCGAFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSLAKEHGHKCPTK 163 22222233444444444333313333333333333334443333445679************************************************ PP FLO_LFY 281 vtn 283 +n Aco019059.1 164 HAN 166 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.5E-32 | 35 | 166 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MAGLSRGAGA AAAASSRVSS SSRAVEGAAG ASADHTAEAL VGRGQEEGRP GRAAPRAAAC 60 VRLRGQCTEG SCSKTKRKRS PQGNYAEHGL EEEEEEMEEE EVKGRREWRA WWCGAFVVTE 120 PGEVARAKKN GLDYLFHLYE QCRLFLLQVQ SLAKEHGHKC PTKHAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 5e-23 | 116 | 166 | 11 | 61 | PROTEIN LEAFY |
2vy2_A | 5e-23 | 116 | 166 | 11 | 61 | PROTEIN LEAFY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB618664 | 4e-44 | AB618664.1 Alstroemeria ligtu subsp. ligtu AlsLFY mRNA for floricaula/leafy protein, complete cds. | |||
GenBank | AB618665 | 4e-44 | AB618665.1 Alstroemeria ligtu subsp. ligtu AlsLFY gene for floricaula/leafy protein, complete cds, allele: Lg1. | |||
GenBank | AB618666 | 4e-44 | AB618666.1 Alstroemeria ligtu subsp. ligtu AlsLFY gene for floricaula/leafy protein, complete cds, allele: Lg2. | |||
GenBank | AB618667 | 4e-44 | AB618667.1 Alstroemeria hybrid cultivar AlsLFY gene for floricaula/leafy protein, complete cds, allele: Gg1. | |||
GenBank | AB618668 | 4e-44 | AB618668.1 Alstroemeria hybrid cultivar AlsLFY gene for floricaula/leafy protein, complete cds, allele: Gg2. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8269 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 2e-23 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Aco019059.1 |