PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019042.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CAMTA
Protein Properties Length: 1030aa    MW: 115521 Da    PI: 5.5241
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019042.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.41.3e-53131283117
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwlk++e++ iL+n+e++++ +e++++p+sgsl+L+nr+++r+frkDG+ w++kkdg++v E+hekLKvg+ +vl+cyYah+e+np fqrr+y
  Aco019042.1  13 QEaHARWLKPSEVLFILQNYESFKIDSEPPQKPPSGSLFLFNRRVLRFFRKDGHAWRRKKDGRAVGEAHEKLKVGNADVLSCYYAHGERNPYFQRRSY 110
                  56689********************************************************************************************* PP

         CG-1 100 wlLeeelekivlvhylev 117
                  w+L+ ++e+ivlvhy+ev
  Aco019042.1 111 WMLDPAYEHIVLVHYREV 128
                  ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.3428134IPR005559CG-1 DNA-binding domain
SMARTSM010763.8E-7311129IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-4814127IPR005559CG-1 DNA-binding domain
PfamPF018334.4E-6480562IPR002909IPT domain
CDDcd001022.05E-5480565No hitNo description
Gene3DG3DSA:2.60.40.107.2E-7481568IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.31E-15481564IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.5E-14659757IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-15663757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.804663755IPR020683Ankyrin repeat-containing domain
CDDcd002041.10E-8668755No hitNo description
PfamPF127963.0E-6680756IPR020683Ankyrin repeat-containing domain
SMARTSM002482.8E-4696725IPR002110Ankyrin repeat
PROSITE profilePS5008811.781696728IPR002110Ankyrin repeat
SMARTSM000158.3816838IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206817846IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.5E-11817919IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0013865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187867895IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032867886IPR000048IQ motif, EF-hand binding site
SMARTSM000158.6E-4888910IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.823889917IPR000048IQ motif, EF-hand binding site
PfamPF006121.0E-4890910IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MQQQGYDINL LRQEAHARWL KPSEVLFILQ NYESFKIDSE PPQKPPSGSL FLFNRRVLRF  60
FRKDGHAWRR KKDGRAVGEA HEKLKVGNAD VLSCYYAHGE RNPYFQRRSY WMLDPAYEHI  120
VLVHYREVAE GRYTGSISNL SPEPNATVDR TTISSNTQSQ GLTTGNNEFC EPYHSSCSSS  180
PVEDAISKAD ERNDSTDGSG KYNSSTRQAL KKLAEQLSLE DDDYIHLEKN HPDYPVMNEN  240
LQLSSNVGGY VHDSGAGKQV GYADFQSLDV SGNHRMEQTL YLGTSYGFER KESPSWKDML  300
ELSSSSGGSD DYRRTNFLGS NDTPELEAPA KDMLTNGTNT MLFSAERNEG PTISFEELSV  360
LQNSKDTSNG HQLDESELRV QLSASRRYLL GSNNYNQSPS SNSLQVLTDD LMLQGNPRTN  420
WMASIPLAVE NNTYSTENNI YSTENNIYST DLRSWFDHYQ FNSSLGLDSS LTPVQNQQFS  480
ISEISPEWAY CSERTKVIIV GKFLCDPSEC SWAAMFGDVE VPIEIVQGGV LRCKAPQHSA  540
GKVTLCVTSA NRESCSELRE FEFRERPTTA FSTGTSPSMN NAKIAEEQLL LAKFVQLLIS  600
QNDSSTTECF GRLNASDDQW QQLIDALESG CENPLGTVDW IIEELLKDKL FSWLSSKSVL  660
SKQEQGIIHL ISGLGYEWAL NPIINAGVGI NFRDANGWTP LHWAAHFGRE NMVAALLAAG  720
ASAGLVTDPT PQDPVGKTPG FIASARGHKG LAGYLSEIAL TSHLFSLTIQ ECEISKVSAE  780
VEADMAVESI SQRSAQLRGG SEDELTIRDS LAAVRNATQA AARIQAAFRA HSFRKKQEKA  840
GQFIDDYGMT QEEVLAAAKL HRSQKFERAA LSIQKNYRGW KGRKDFLTLR KHVVKIQAHV  900
RGHQVRKKYR EILRAVSVIE KIVLRWRRRG SGLRGFRNEP EPEMVEVEED EEEEDVAKVF  960
RKQKVDEALE EAVSRVLSMV DSPKARQQYC RVLGRYHQAK ADSSTPDEAT SRLRDDFTII  1020
EDDDFMYSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6670481e-119KM667048.1 Ananas bracteatus clone 52454a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110462.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A199VED30.0A0A199VED3_ANACO; Calmodulin-binding transcription activator 4
STRINGXP_008807442.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-155Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]