PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018978.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 880aa    MW: 97378.9 Da    PI: 6.387
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018978.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23128229199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +
  Aco018978.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVAKDLHDVSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RDEKSQ 221
                  99*****************************96555444..8************************************************..456777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco018978.1 222 LLLGIRRA 229
                  89999997 PP
2Auxin_resp1255.1e-41254336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Aco018978.1 254 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQ 336
                  79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-45118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41120243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-20127228No hitNo description
SMARTSM010197.0E-24128230IPR003340B3 DNA binding domain
PfamPF023621.9E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323128230IPR003340B3 DNA binding domain
PfamPF065071.1E-35254336IPR010525Auxin response factor
PfamPF023093.7E-9752841IPR033389AUX/IAA domain
PROSITE profilePS5174524.182755839IPR000270PB1 domain
SuperFamilySSF542774.71E-8769834No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MKAPAANGLA PNGVEGERKN MNSELWHACA GPLVSMPPVG SLVVYFPQGH SEQVVAASMH  60
KEMDSTPSYP SLPSKLICML HDVTLHADSE TDEVYAQMTL QPVNKYDREA MLASEMGLKQ  120
NKQPTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFT MQPPAQELVA KDLHDVSWTF  180
RHIYRGQPKR HLLTTGWSVF VSTKRLLAGD SVLFIRDEKS QLLLGIRRAN RQQPALSSSV  240
LSSDSMHIGI LAAAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYNKALYT QVSLGMRFRM  300
LFETEDSGVR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTATERRTR VSIWEIEPVA  360
TPFYICSPPF FRPKFPHQPG IQDDGAEVEN AFRRVMPWLA DDFGLKDPNP IFPGLSLVQW  420
MAMQQNSQLV PSATQTPYLP SVTASALPNP LPTDDPTKML NFNTSSLALP NLQFGPKLNP  480
QTESQQQTQP LQQTSLPLQA PPVQHSSSQL NQQEKQQKQE QIQPIQSPQK QLLKPLGGQI  540
SPQAQLLNQM SQPPSSLLPQ QGAPSCSIPP STNCNISPSN LLSRTQQGPA ENSLQEIQSK  600
PGARVKHGMM HGKEKIMQMP NRNSIADQLD ASSTTSFCMD GSQHDFSLPP LPMEGDIQVD  660
NRDNLLNGAN MNGFMSSNLM SRGVGSGKDI QNLQPGYGNQ REVETEVSTA DMSAQSFGMG  720
GMSFKSGFSG DAAVAEAGMS NRGLWSNQPQ PQRMRTYTKV QKRGSVGRSI DMTRYRGYDE  780
LRHDLACMFG IQGQLEDPYR TEWKLVYMDH ENDILLVGDD PWEEFVTCVQ SIRILSSAEV  840
QQMSLDGELA NIPPQAQACS GTDNGNMWYD DTSTGSFHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691635745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020268912.10.0auxin response factor 16 isoform X1
SwissprotA3B9A00.0ARFP_ORYSJ; Auxin response factor 16
TrEMBLA0A199VY380.0A0A199VY38_ANACO; Auxin response factor
STRINGOMERI03G31460.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Shen C, et al.
    OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).
    Plant Cell Environ., 2013. 36(3): p. 607-20
    [PMID:22913536]
  2. Shen C, et al.
    OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(11): p. e112906
    [PMID:25386911]
  3. Shen C, et al.
    OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).
    Plant Sci., 2015. 231: p. 148-58
    [PMID:25576000]