PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018903.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 306aa    MW: 33315.5 Da    PI: 6.2314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018903.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.1e-165399455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Aco018903.1 53 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 99
                 6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-2046111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-2046110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.864998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1652103No hitNo description
PfamPF000101.8E-135399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-1855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPFSSLDPYS GGDSDELGSR GHDFDESEEG AEEPVRRIQP RSSGSKRSRA AEVHNLSEKR  60
RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLTMRNS LHLHPMYLSG  120
VLPPLQASEM CMGLVADNST GMSIGMGILS LNQDSAAHHS LDQLNHCAPS NQPALLTSAT  180
SITIPECSFQ IESSQSQIGP FQLPSVTAEA LFTEDILPKH QLASGRVAAS LQDEMKPKRV  240
AATSRHFAAQ ASSPADIDHL QSCMGRGEKL VNINMIANDP QGHIFVQHLQ RLESGRAPDA  300
DAKAE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110208.10.0transcription factor SPATULA-like isoform X1
TrEMBLA0A3Q0I3Y63e-92A0A3Q0I3Y6_PHODC; transcription factor bHLH77-like isoform X1
STRINGXP_008793886.13e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-39bHLH family protein