PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018756.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 319aa    MW: 33356.4 Da    PI: 7.5867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018756.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-12161205347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Aco018756.1 161 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 205
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.1111489IPR017877Myb-like domain
SMARTSM007170.361891IPR001005SANT/Myb domain
CDDcd001670.006296685No hitNo description
PROSITE profilePS5129417.097154210IPR017930Myb domain
SuperFamilySSF466894.38E-17155211IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17157208IPR006447Myb domain, plants
SMARTSM007172.3E-10158208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-11159204IPR009057Homeodomain-like
CDDcd001671.17E-9161206No hitNo description
PfamPF002498.0E-11161205IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAGTAAAAAA AAAEEEEEVA GWSRDDNKAF ENAVAAVAPP EVAGAERGGG GGGGSEEGGG  60
GDGKWWDMIA ARVPGKTAAE VRRHYEILVE DVRAIEAGRV PIPRYSGEEA APPHPPAAGK  120
EGHGHGHGHG QGQGVGEKKG LGFEVGKGCS KSEQERKKGI PWTEEEHRLF LLGLDKFGKG  180
DWRSISRNFV ISRTPTQVAS HAQKYFIRLN SINRDRRRSS IHDITSVNSG EVSSSPQGPI  240
TGQGNGTHPA TIRPPMAHQP LPSQPPIPAV GMYGPPLGHP VPGHMISAIG TPVMLPPPGH  300
VPYVVPVAHP VLSPKIHQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098199.10.0transcription factor SRM1-like
SwissprotB8A9B24e-92MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH594e-92MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A199UMF31e-180A0A199UMF3_ANACO; Transcription factor DIVARICATA
STRINGGSMUA_Achr9P21870_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-36MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]