PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco018658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 37928 Da PI: 7.6257 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 78 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia++++ gR++k+c++rw++ Aco018658.1 78 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 123 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 130 | 173 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++ +eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++++ Aco018658.1 130 RRSFGEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHFHV 173 56789*****************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.464 | 73 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 77 | 126 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-27 | 78 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-16 | 78 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 79 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-13 | 81 | 122 | No hit | No description |
PROSITE profile | PS51294 | 23.658 | 125 | 179 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-14 | 129 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 130 | 172 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 132 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.43E-7 | 141 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGPQQVKSPA EMGFFTPPFL PPPPPFHGGF GLSNGDVECR SSGMSFSMEQ QQQQQPLEGE 60 AASGGSSHGD GPQKLCARGH WRPAEDAKLK ELVSQYGPQN WNLIAEKLQG RSGKSCRLRW 120 FNQLDPRINR RSFGEEEEER LLAAHRLYGN KWALIARLFP GRTDNAVKNH FHVIMARRQR 180 RELQSSCTSP SYRRRRSSTS TSSLTTSTPH TMMMMMMIST TDLKASSAGG GDHESTVTTS 240 PAHREESAAS TCSTDLSLSP FTTTFHFSTR SSYDEKVAAG NGFFPQSAFG FSDAASEASA 300 TEPATSNNNN NNNNNNNQMS PWLFGEVENQ RGEMSLPFID FLGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 78 | 178 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102597.1 | 0.0 | transcription factor MYB56-like isoform X1 | ||||
Swissprot | Q5NBM8 | 7e-71 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2H3Y4J9 | 1e-86 | A0A2H3Y4J9_PHODC; transcription factor CSA-like | ||||
STRING | XP_008793340.1 | 2e-87 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-60 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Aco018658.1 |