PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco018657.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 498aa MW: 53722.8 Da PI: 6.3723

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco018657.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.2	4.9e-40	137	198	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+sss Aco018657.1 137 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSSS 198 78999*****************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	134	194	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	138	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	141	195	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	143	179	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MRYVSPWGLE TRSCGGVMAE LRDPAIKLFG RTIAAVAPPP MPTPAAAASD EVEPPEESPE 60 VDKVISKEVE NTEINDVKQD GPEVISHTEH DNSSGPSNVN EDGHRANSED SKSTENSKEQ 120 VKTEGDDPGQ EKVLKKPDKV LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKHSSSHY RHIMVQSDGP DLVHHQTLQC GPAVPVRPVK GNGTVLQFGP 240 EMPLCESMAS VLNIGEQGKN NNTDENREEP SCASSVTATN IAENGPTKSA FHNEQNGMQG 300 YCNGFTLPPC YLGPPFIYPW GPGYTNVACG PENGNPGPTA WAPPPVMPPP GFCASTIPFP 360 LVPASFWACL SGWPNGPWSM PWVGSNGGVS PSSSTSNSNC SGNGSPTLGK HSRDSSLQGE 420 EKMEKSLWVP KTLRIDDPDE AAKSSIWSTL GIKPNNKGIF KPFQSKVESK GQTSDNAHVL 480 LSNPAAFSRS QSFRESS*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MRYVSPWGLE TRSCGGVMAE LRDPAIKLFG RTIAAVAPPP MPTPAAAASD EVEPPEESPE  60
VDKVISKEVE NTEINDVKQD GPEVISHTEH DNSSGPSNVN EDGHRANSED SKSTENSKEQ  120
VKTEGDDPGQ EKVLKKPDKV LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKHSSSHY RHIMVQSDGP DLVHHQTLQC GPAVPVRPVK GNGTVLQFGP  240
EMPLCESMAS VLNIGEQGKN NNTDENREEP SCASSVTATN IAENGPTKSA FHNEQNGMQG  300
YCNGFTLPPC YLGPPFIYPW GPGYTNVACG PENGNPGPTA WAPPPVMPPP GFCASTIPFP  360
LVPASFWACL SGWPNGPWSM PWVGSNGGVS PSSSTSNSNC SGNGSPTLGK HSRDSSLQGE  420
EKMEKSLWVP KTLRIDDPDE AAKSSIWSTL GIKPNNKGIF KPFQSKVESK GQTSDNAHVL  480
LSNPAAFSRS QSFRESS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103272.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A199W4J7	0.0	A0A199W4J7_ANACO; Cyclic dof factor 2
STRING	XP_008793337.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-71	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Aco018657.1