PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco018505.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SBP

Protein Properties

Length: 341aa MW: 36465.3 Da PI: 8.6597

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco018505.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.6e-42	57	132	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak y+ rhkvC +hskap v+v gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Aco018505.1 57 RCQVEGCHVDLTGAKAYYCRHKVCAMHSKAPRVVVGGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 132 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.5E-35	51	119	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.453	55	132	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.94E-40	56	135	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.3E-33	58	131	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0042127	Biological Process	regulation of cell proliferation
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MTWPIWQIYF EDGGGGGGGG GGGGGGGESS SSSSSSSATS SSMGAKKGKG AAQGTPRCQV 60 EGCHVDLTGA KAYYCRHKVC AMHSKAPRVV VGGLEQRFCQ QCSRFHQLPE FDQGKRSCRR 120 RLAGHNERRR KPPVPLSSRY GRLPPSFHED PSRFRSFIMD FTNYPRLPST TTNARDVWPT 180 VSRAGDRFAS AAPNPWPLDY HRTAGSHGNV FSPTELPPHE CFSGVATDSS CALSLLSTQP 240 WGNHTTSNRT PVMPHSHVPQ SVGPGNFTNS SWGFRGHVER PGSHEMPNEM GIGILPGAAG 300 AGNDQFTGEL ELDLQGNGPN PDHGSSRGFD HSGHGMHWSL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	48	131	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00412	DAP	Transfer from AT3G57920	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091275.1	0.0	squamosa promoter-binding-like protein 14 isoform X2
Swissprot	Q7EXZ2	1e-81	SPL14_ORYSJ; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2S0UT60	0.0	A0A2S0UT60_9POAL; SPL14
STRING	XP_008795751.1	1e-121	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-48	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Aco018505.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Miura K, et al. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat. Genet., 2010. 42(6): p. 545-9 [PMID:20495564] Jiao Y, et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat. Genet., 2010. 42(6): p. 541-4 [PMID:20495565] Springer N Shaping a better rice plant. Nat. Genet., 2010. 42(6): p. 475-6 [PMID:20502488] Wang Y,Li J Branching in rice. Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9 [PMID:21144796] Wang J,Kong L,Gao G,Luo J A brief introduction to web-based genome browsers. Brief. Bioinformatics, 2013. 14(2): p. 131-43 [PMID:22764121] Luo L,Li W,Miura K,Ashikari M,Kyozuka J Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways. Plant Cell Physiol., 2012. 53(10): p. 1793-801 [PMID:22960246] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853] Cruz-Garcia GS,Struik PC Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1. Econ. Bot., 2015. 69(2): p. 99-113 [PMID:26160981] Srikanth B, et al. Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions. Gene, 2016. 576(1 Pt 3): p. 441-50 [PMID:26519999] Perignon M, et al. Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial. Nutrients, 2016. [PMID:26751473] Kim SR, et al. Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L. Rice (N Y), 2016. 9(1): p. 12 [PMID:26987543]