PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018128.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CPP
Protein Properties Length: 589aa    MW: 64223.4 Da    PI: 8.8152
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018128.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.41.4e-13125164242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Aco018128.1 125 RKKNCNCKNSRCLKLYCECFASGVYCDG-CNCTNCCNNVEN 164
                  689*************************.********9875 PP
2TCR51.12.7e-16209248140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Aco018128.1 209 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCIDCKNFE 248
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-12124164IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.733125249IPR005172CRC domain
PfamPF036381.0E-9126161IPR005172CRC domain
SMARTSM011142.1E-20209250IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-13212247IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MEQGIQPAAS SSAAAPPQQG DLPAKKLVRQ LDFTSTAYPG NPAVAAAAAA VSRALDQRPL  60
PQQILPXGSW ISPPRRTPGT PRWPPRPPPC RGLSTSARSR SRRKPESPKS RTRQHSDAKD  120
GTPTRKKNCN CKNSRCLKLY CECFASGVYC DGCNCTNCCN NVENEAARRD AVDTTLERNP  180
DAFRPKIGNS PHAVRDSRGD AGELPLVGKH NKGCHCKKSG CLKKYCECFQ ANILCSDNCK  240
CIDCKNFEGS EERRALFHGD HGSNLYMQQA ANAALNGAIG PSGFLSSSTS RKRKNQEVLF  300
GTSVRDQPVH RVSQFPQAAH LRNAAQPSFA PVPVCCPTNS ANLGACKVTY RPLLADIVQT  360
EDVKELCKIL IVFSREIANV VSGRKAQEEK LLGKEDITEA SLSSTNHEKE GNQSDLEIQK  420
ASANDRLGGT NIDKTNAEQS GSDHADTQKI SRPMSPGTLA LMCDEEDTMF ITPQNAALTP  480
SFPANQNMSE VYAEQERGVL MKFRDYIRKI VTCGRMKEER YSLMAMKSET PSRQEPISNG  540
VPKALMSRTT ELPPVTKTVT ASSSKYPSIE RPISGPIEKK PKIEHSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3112625811132Protein lin-54 homolog
5fd3_B2e-3112625811132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6619931e-156KM661993.1 Ananas bracteatus clone 45206 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099402.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A199VTX40.0A0A199VTX4_ANACO; Protein tesmin/TSO1-like CXC 5
STRINGXP_008793061.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-138Tesmin/TSO1-like CXC domain-containing protein