PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018124.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 750aa    MW: 83988.9 Da    PI: 6.4099
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018124.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-2194149156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t eq++++e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  Aco018124.1  94 RKKYHRHTVEQIRVMEALFKESPHPDEKQRQQLSKQLGLSPRQVKFWFQNRRTQIK 149
                  7999************************************************9877 PP
2START1961.7e-612664883206
                  HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                   ++a++el k+a+ +ep+W +s     e++n+de++ +f+++ +       s+ea+r+sg+v+ + a+lv+ ++d++ qW+e ++    ka+tl+vi 
  Aco018124.1 266 VNSALDELTKMASYREPLWIRSIetgrEILNYDEYICQFSPDTSqnkqpkISIEASRESGIVFLDIARLVQAFMDVN-QWKELFPcmisKAATLDVIY 362
                  67899***********************************998899***99**************************.*******************9 PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                          g++qlm+aelq+l+p+vp R+ +fvRy+++l+ ++w+ivdvSvd  +++  ++s+ ++++ pSg++ie+ +ngh+kvtwveh+++++  +
  Aco018124.1 363 AEesenrdGTIQLMFAELQMLTPTVPtRELYFVRYCKKLTPDRWAIVDVSVDKIEENI-DASLEKCRKNPSGCIIEDQANGHCKVTWVEHIECQKIAV 459
                  999999**************************************************98.9************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 hwllrslvksglaegaktwvatlqrqcek 206
                  + ++rs+v +gla+ga++w+atlq +ce+
  Aco018124.1 460 PTMYRSIVINGLAFGARHWMATLQLHCER 488
                  ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2280145IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2185152IPR009057Homeodomain-like
PROSITE profilePS5007118.20491151IPR001356Homeobox domain
SMARTSM003891.0E-1993155IPR001356Homeobox domain
PfamPF000466.1E-1994149IPR001356Homeobox domain
CDDcd000862.31E-1798149No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084839.477255491IPR002913START domain
SuperFamilySSF559612.88E-31257488No hitNo description
CDDcd088752.86E-105259487No hitNo description
SMARTSM002341.0E-60264488IPR002913START domain
PfamPF018526.3E-50265488IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4310482IPR023393START-like domain
SuperFamilySSF559612.33E-10510682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDNNNYNNSH TKNYFASPAL SLSLAGVFRN AGAVAAAEVE EGDEGSGGGG YCRVDQVENS  60
SENNGLAGQS DDEEGIDGSA EEDEEVENKK KKKRKKYHRH TVEQIRVMEA LFKESPHPDE  120
KQRQQLSKQL GLSPRQVKFW FQNRRTQIKA IQERHENSLL KSEMDKLREE NRAMRETIKK  180
ACCPNCGFAT SNNDTAMTTE EQQLRIENAR LKAEIEKLRG MQGKVADGAS SPSSSFSAGT  240
NQNTKSSFDY YTGFFGLEKS RILELVNSAL DELTKMASYR EPLWIRSIET GREILNYDEY  300
ICQFSPDTSQ NKQPKISIEA SRESGIVFLD IARLVQAFMD VNQWKELFPC MISKAATLDV  360
IYAEESENRD GTIQLMFAEL QMLTPTVPTR ELYFVRYCKK LTPDRWAIVD VSVDKIEENI  420
DASLEKCRKN PSGCIIEDQA NGHCKVTWVE HIECQKIAVP TMYRSIVING LAFGARHWMA  480
TLQLHCERIV FFMATNVPTK DSNGVSTLAG RKSILKLAHR MSLSFCHNIG ASRYNTWQKV  540
SKGGEDIRVT TRKNINEPGE PQGLVACVVL STWLPLSSIA LFDFLRDESR RTEWDITLSG  600
SPTQTIVNLA KGQHRGNSVT VHKMKSAEKT NKWLLQDSST NAYESIVVYT ELDADSLQSV  660
MTGCDSSKVA VLPYGFSILP DGLETKPLLI TMRKEEKSSE GGSLLTVAYQ FHANSSPLAK  720
LTTEFVENVT SLVSCTLLNI KKAFQCEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKKKRK
28995KKKKRKK
39195KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098513.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A199W2730.0A0A199W273_ANACO; Homeobox-leucine zipper protein GLABRA 2
STRINGXP_008789333.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]