PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco018092.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 214aa MW: 22623.1 Da PI: 8.8485 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 69.5 | 5.1e-22 | 87 | 128 | 5 | 45 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrry.WtkGGa 45 l+cprC s++tkfCy+nny+++qPr+fCk+Cr+ t+GGa Aco018092.1 87 PLPCPRCRSRETKFCYFNNYNVNQPRHFCKSCRQLtGTAGGA 128 679*****************************9962578886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.4E-18 | 87 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 18.017 | 88 | 139 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-13 | 88 | 128 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGPGEAAAAA AAAAAAAAAP VIKLFGAVIH DRPPKEEEED DDDDAASASA AAAAAAARPP 60 PPSSSAESGG GGGGGGGGAA AAGVSAPLPC PRCRSRETKF CYFNNYNVNQ PRHFCKSCRQ 120 LTGTAGGAPA TSRRRRPPQG PSPPHPSPDR CFPRPIAPRF RRPPLRLTKI HDEDEDEDDH 180 HHHHHHHQQR LAIDYHFKES VHHPPKKRKK EKT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 210 | PKKRKKE |
2 | 205 | 209 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ969263 | 9e-55 | AJ969263.1 Hordeum vulgare dof17 gene for dof zinc finger protein 17, cultivated variety Bomi. | |||
GenBank | AK360617 | 9e-55 | AK360617.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121P17. | |||
GenBank | AK365055 | 9e-55 | AK365055.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030J14. | |||
GenBank | HG670306 | 9e-55 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098489.1 | 1e-151 | dof zinc finger protein DOF3.7-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 1e-17 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco018092.1 |