PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 147aa MW: 16328.9 Da PI: 11.8105 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 46.1 | 1.1e-14 | 76 | 106 | 2 | 32 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryf 32 ++ alkcp+Cdstntk Cy+nnyslsqPry+ Aco017970.1 76 PDPALKCPQCDSTNTKSCYFNNYSLSQPRYL 106 67899************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-9 | 72 | 102 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-12 | 79 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSWEGETPRE GARFLGRRDT LGRRRFTLEN KKIKGKKKKS KKKTPQKPSP RPPAPSLPIA 60 ACPPAALARL AKIPQPDPAL KCPQCDSTNT KSCYFNNYSL SQPRYLHPRG GPPLGGGHLR 120 PRRSRGPRCS RGQQQRPRRG EDLGNK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 38 | RRRFTLENKKIKGKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343295.1 | 2e-17 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
TrEMBL | A0A199V252 | 5e-98 | A0A199V252_ANACO; Dof zinc finger protein DOF3.6 | ||||
STRING | XP_009343295.1 | 9e-17 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.3 | 3e-11 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Aco017970.1 |