PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017964.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 395aa    MW: 44986.5 Da    PI: 9.2147
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017964.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17108157155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Aco017964.1 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 157
                  78*******************......55************************997 PP
2AP224.75.7e-08200239144
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAak 44 
                  s+++GV+ +k  g+W+A++      g     k+ +lg ++t+ eAa+
  Aco017964.1 200 SKFRGVSLHK-CGKWEARL------GqlLEkKYMYLGLYDTEVEAAR 239
                  79********.7******4......334235**********778776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-9108157IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-15108166IPR016177DNA-binding domain
SMARTSM003804.4E-31109171IPR001471AP2/ERF domain
PROSITE profilePS5103217.517109165IPR001471AP2/ERF domain
CDDcd000184.80E-11109166No hitNo description
Gene3DG3DSA:3.30.730.101.2E-16109165IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-8200240IPR016177DNA-binding domain
CDDcd000188.51E-17200284No hitNo description
SMARTSM003802.8E-16201288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-5201239IPR001471AP2/ERF domain
PROSITE profilePS510329.163201258IPR001471AP2/ERF domain
PRINTSPR003673.3E-5202213IPR001471AP2/ERF domain
PRINTSPR003673.3E-5264284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEKEEATAVS KREMWDLNGM AMAIEGGAQG EEKDDKIFGF SISGRCRSGH VDRSSPSAAL  60
VTRDFFPMAA SKERRARDAS AMTHHHHRMA EPPQPAKKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQVYLGGFDT AYAAARAYDR AAIKFRGVDA DINFNAEDYE EDLKKMSNLA  180
KEEFVQLLRR QSTGSSRGSS KFRGVSLHKC GKWEARLGQL LEKKYMYLGL YDTEVEAARY  240
LHFSINHFQF CSKFYRFGHF IFRAYDIAAI NCNGRDAITN FDLSIYENDL PLSPADRFER  300
DLDLSLSCSG SKQSEHELVD KASSNGTDQQ VPATFKLELN RRIRAKIDHK FNLHGENELR  360
SNCYPINLHS SGTFNYPQLQ MIDKVRSLQF SPSG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6673836e-48KM667383.1 Ananas bracteatus clone 52799a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109849.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotA0A0N7KMH01e-96AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A199V2R50.0A0A199V2R5_ANACO; Floral homeotic protein APETALA 2 (Fragment)
STRINGXP_008788845.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-73AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]