PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 31471.1 Da PI: 10.6911 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 97 | 142 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l d+v q+G+ +W++Ia+++ gR++k+c++rw++ Aco017900.1 97 RGHWRPAEDARLRDLVSQFGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 142 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 150 | 192 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++ E+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ Aco017900.1 150 RAFSEGEEERLLAAHQLYGNK-WALIARLFP-GRTDNAVKNHWHV 192 6799*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.053 | 92 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-13 | 96 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 97 | 142 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.06E-27 | 97 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 98 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-11 | 100 | 141 | No hit | No description |
PROSITE profile | PS51294 | 25.866 | 144 | 198 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-14 | 148 | 196 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-14 | 150 | 191 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-20 | 151 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.97E-10 | 151 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGFFTPSPPP PPPFHGASAS PPGDRECRSS EMGFSAQQQQ QQQRQKKKQK LAWGFDEVGE 60 AKALDGIERA NGGDVGGGGG GGGGGGHGNG QTKLCSRGHW RPAEDARLRD LVSQFGPQNW 120 NLIAEKLDGR SGKSCRLRWF NQLDPRINKR AFSEGEEERL LAAHQLYGNK WALIARLFPG 180 RTDNAVKNHW HVIMARKSRE QSKTSSRRRR PFASPSSPSS PENQNSGVKV KVKVKVNENV 240 NACSGGEPSV SSHREGSAST CTDLSLNSFA RFSSPQKPQS FELHIMGAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-31 | 94 | 197 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-31 | 94 | 197 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM666792 | 1e-171 | KM666792.1 Ananas bracteatus clone 52181c microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087604.1 | 0.0 | transcription factor MYB90-like | ||||
Swissprot | Q5NBM8 | 6e-71 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A199VGS0 | 1e-157 | A0A199VGS0_ANACO; Transcription factor MYB44 | ||||
STRING | XP_008793340.1 | 7e-87 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 5e-66 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Aco017900.1 |