PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017875.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 315aa    MW: 35232.3 Da    PI: 5.6022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017875.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
      Aco017875.1 18 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 65
                     79********************************************97 PP
2Myb_DNA-binding46.11.1e-1471116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+  +v++  +lG++ W++Ia++++  Rt++++k++w+++l
      Aco017875.1  71 RGNFTPHEEGMIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 116
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-24968IPR009057Homeodomain-like
PROSITE profilePS5129425.3161369IPR017930Myb domain
SuperFamilySSF466891.5E-3015112IPR009057Homeodomain-like
SMARTSM007172.1E-131767IPR001005SANT/Myb domain
PfamPF002495.3E-161865IPR001005SANT/Myb domain
CDDcd001671.94E-112065No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2469121IPR009057Homeodomain-like
PROSITE profilePS5129418.67670120IPR017930Myb domain
SMARTSM007173.4E-1370118IPR001005SANT/Myb domain
PfamPF002491.1E-1271116IPR001005SANT/Myb domain
CDDcd001672.97E-973116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
VIREMGRPPC CDKVGIKKGP WTPEEDIILV SYIQEHGPGN WRSVPTNTGL MRCSKSCRLR  60
WTNYLRPGIK RGNFTPHEEG MIVHLQSLLG NRWAAIASYL PQRTDNDIKN YWNTHLKKKI  120
KKLQTDAQDS YYNMASSDTI SPPFNDPTSK GYSSTEAPLP SSFHSSSLYA SSAENISRLL  180
EGWMRSSSPN SYHENSQQES PLIAANNYSS SQENGDDQGA GCALINNQCG REQLESLLVF  240
ENIGACWEKP VGEPLADQLI AAADHEHNQG EVKQKQEQYP LCFLEKWLLD EATSGHVEGL  300
MEFSPEQCCS NPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251612025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087041.10.0myb-related protein 306-like
SwissprotB3VTV71e-108MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A199V8G20.0A0A199V8G2_ANACO; Myb-related protein 306 (Fragment)
STRINGXP_008775987.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-91myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]