PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017794.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 290aa    MW: 31296.2 Da    PI: 5.965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017794.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1869118255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y GVr+++ +gr++AeIrdp +   + r++lg+++taeeAa a+++a+++l+g
  Aco017794.1  69 RYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTYDTAEEAAVAYDRAARALRG 118
                  588******.**********843...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-2968127No hitNo description
PfamPF008475.6E-1169118IPR001471AP2/ERF domain
PROSITE profilePS5103221.62869126IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2169126IPR016177DNA-binding domain
SMARTSM003802.0E-3369132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2869126IPR001471AP2/ERF domain
PRINTSPR003674.8E-87081IPR001471AP2/ERF domain
PRINTSPR003674.8E-892108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDFSYFSSSS SSSRSSVSAS DASSSSVKKQ SKRRDDNRRK QQLQHHFHSS NTTTATATAI  60
AAATNSEARY LGVRRRPWGR YAAEIRDPAT KDRHWLGTYD TAEEAAVAYD RAARALRGPR  120
ARTNFAYPDL PPGSSITPFL SPDLKITTHH HHHHLMSVVA SPHPPVSLPP HTTHPQYLCN  180
EEGEEDMLTS WVDEYTQLGG PIEPCEPIGS GHVQAGGASE SLDTGAGPVG NAEEEAAMWW  240
DGGGPEPGFN AAMYFEEGYV HSPMFGPMPA AEDSAADGFQ LGGSASFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1770125662ATERF1
3gcc_A2e-1770125662ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112047.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A199UDU91e-176A0A199UDU9_ANACO; Ethylene-responsive transcription factor LEP
STRINGPavir.Gb01913.1.p8e-63(Panicum virgatum)
STRINGXP_008778271.11e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-24ERF family protein