PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017649.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 230aa    MW: 26270.3 Da    PI: 5.4876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017649.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed++lv+ v+++G ++W+  a+  g+ R++k+c++rw +yl
      Aco017649.1 11 RGPWSEQEDLQLVRFVRLFGERRWDYLAKVSGLSRSGKSCRLRWVNYL 58
                     89********************************************97 PP

2Myb_DNA-binding54.23.4e-1764107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+el ++++ ++G++ W++Ia+ ++ gRt++++k++w++
      Aco017649.1  64 RGPMTPQEEELVIELHDKWGNR-WARIAQSLP-GRTDNEIKNYWRT 107
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.119658IPR017930Myb domain
SuperFamilySSF466896.74E-299105IPR009057Homeodomain-like
SMARTSM007172.2E-131060IPR001005SANT/Myb domain
PfamPF002495.8E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-201265IPR009057Homeodomain-like
CDDcd001673.89E-91358No hitNo description
PROSITE profilePS5129426.91559113IPR017930Myb domain
SMARTSM007174.6E-1663111IPR001005SANT/Myb domain
PfamPF002495.4E-1664107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2466112IPR009057Homeodomain-like
CDDcd001671.43E-1066107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVAAREGNTR RGPWSEQEDL QLVRFVRLFG ERRWDYLAKV SGLSRSGKSC RLRWVNYLHP  60
SLKRGPMTPQ EEELVIELHD KWGNRWARIA QSLPGRTDNE IKNYWRTRMR KKAQERKTTR  120
TSVSNSSPSS SSSNVSSSNS EENMDIGDKK SETVELKKDE GFTMDQIWSE IGALDQMDDG  180
ASFEGLKEGC CSDLGPSSLP SPVCEYWSEA LWRIDDEEYE MLLSLPVHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27111134105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-271111358159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-271111358159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27111134105C-Myb DNA-Binding Domain
1msf_C2e-27111134105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102550.11e-169myb-related protein MYBAS1-like
SwissprotQ53NK65e-72MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A199UJ671e-167A0A199UJ67_ANACO; Myb-related protein MYBAS1
STRINGXP_008795797.11e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-66myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]