PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26270.3 Da PI: 5.4876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.3e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++lv+ v+++G ++W+ a+ g+ R++k+c++rw +yl Aco017649.1 11 RGPWSEQEDLQLVRFVRLFGERRWDYLAKVSGLSRSGKSCRLRWVNYL 58 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+el ++++ ++G++ W++Ia+ ++ gRt++++k++w++ Aco017649.1 64 RGPMTPQEEELVIELHDKWGNR-WARIAQSLP-GRTDNEIKNYWRT 107 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.119 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-29 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-20 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-9 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 26.915 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 64 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-10 | 66 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVAAREGNTR RGPWSEQEDL QLVRFVRLFG ERRWDYLAKV SGLSRSGKSC RLRWVNYLHP 60 SLKRGPMTPQ EEELVIELHD KWGNRWARIA QSLPGRTDNE IKNYWRTRMR KKAQERKTTR 120 TSVSNSSPSS SSSNVSSSNS EENMDIGDKK SETVELKKDE GFTMDQIWSE IGALDQMDDG 180 ASFEGLKEGC CSDLGPSSLP SPVCEYWSEA LWRIDDEEYE MLLSLPVHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 11 | 113 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-27 | 11 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-27 | 11 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102550.1 | 1e-169 | myb-related protein MYBAS1-like | ||||
Swissprot | Q53NK6 | 5e-72 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A199UJ67 | 1e-167 | A0A199UJ67_ANACO; Myb-related protein MYBAS1 | ||||
STRING | XP_008795797.1 | 1e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-66 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Aco017649.1 |
Publications ? help Back to Top | |||
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