PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017307.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 694aa    MW: 76693.8 Da    PI: 7.0636
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017307.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-2148103156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Aco017307.1  48 KKRYHRHTAHQIQEMETLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 103
                  688999***********************************************998 PP
2START153.71.6e-482484733206
                  HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  a +aa++l ++   + p+Wv+     +g+evl   e ++              +++ea r+s++v+m++ +lv  +ld + +W e ++    ka t++
  Aco017307.1 248 AMTAADQLTRMCHTSGPLWVRNT--GDGTEVLDLDEHGRMfpwpidskeqhmeFRTEATRDSALVIMNSITLVDAFLDAN-KWMELFPsivlKARTVQ 342
                  678899999999999*****999..88888888888877788888889999999**************************.***************** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                   i +g      g l+lm aelq lsplvp R+  f Ry++q +g+g+w+ivd  vd  q+   + s++R++++pSg++i++++ng+s+v+wveh++++
  Aco017307.1 343 IIAPGisghcnGSLHLMHAELQYLSPLVPvREIQFFRYCQQnSGEGTWTIVDFPVDGFQDAGLQVSLARCRRRPSGCIIQDMPNGYSRVIWVEHIEVE 440
                  ************************************************************999*********************************** PP

                  SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                  +r +h+++ ++v+sg+a+ga +wv+ lqrqce+
  Aco017307.1 441 DRPVHQVFSQFVNSGMAFGATRWVSILQRQCER 473
                  *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-1942107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-2142110IPR009057Homeodomain-like
PROSITE profilePS5007117.24845105IPR001356Homeobox domain
SMARTSM003893.8E-1946109IPR001356Homeobox domain
PfamPF000462.0E-1848103IPR001356Homeobox domain
CDDcd000861.07E-1848106No hitNo description
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
PROSITE profilePS5084843.544237476IPR002913START domain
SuperFamilySSF559615.27E-28240475No hitNo description
CDDcd088759.38E-113241472No hitNo description
SMARTSM002349.3E-31246473IPR002913START domain
PfamPF018522.1E-40248473IPR002913START domain
SuperFamilySSF559612.2E-9491589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MYKFSVSSXG SGHVDGLSCG EEHDNEHQKL QQQHQQQQQQ TPSGSAKKKR YHRHTAHQIQ  60
EMETLFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD NVVLRAENDS  120
LKNENFRLQA AIRNVVCPNC GGPAVLGEMS FDEQHLRIEN ARLKDELERL TCIASRYSGS  180
GSGGRPMQPL GAAAPMMMPS LDLDMGIYSR HFSEPALANC TDMIPDGHQP FAGMPIMDQD  240
KPLVLDLAMT AADQLTRMCH TSGPLWVRNT GDGTEVLDLD EHGRMFPWPI DSKEQHMEFR  300
TEATRDSALV IMNSITLVDA FLDANKWMEL FPSIVLKART VQIIAPGISG HCNGSLHLMH  360
AELQYLSPLV PVREIQFFRY CQQNSGEGTW TIVDFPVDGF QDAGLQVSLA RCRRRPSGCI  420
IQDMPNGYSR VIWVEHIEVE DRPVHQVFSQ FVNSGMAFGA TRWVSILQRQ CERLASLMAR  480
NISDLGVIPS PEARKNMMKL SQRMIRTFCA NVSASGMQSW TALSDSSEDT IRVTTRKNTE  540
PGQPNGVILT AASTTWLPFS HQQVFDLLTD EQRRSQLDVL SSGNSLHEVA HIANGSHPRN  600
CVSLLRINVS IHSSPYRCDG SGASAATAAA VAPGCLLTIS MQVLASAVPS AKLNLSSVTA  660
VNHHLCNAVR QISAALGGPP QPEPAGTAAP PDP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084988.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1U7YXD90.0A0A1U7YXD9_NELNU; homeobox-leucine zipper protein ROC3-like isoform X1
STRINGXP_010245210.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]