PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017254.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 269aa    MW: 30313.9 Da    PI: 6.6045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017254.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-192572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lv++v ++G + W+t +++ g++R++k+c++rw++yl
      Aco017254.1 25 RGAWTAEEDQKLVEYVMLHGDKKWRTLPAKAGLNRCGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding53.84.4e-1778123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
      Aco017254.1  78 RGNISEDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 123
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6862072IPR017930Myb domain
SMARTSM007171.2E-142474IPR001005SANT/Myb domain
SuperFamilySSF466891.69E-2924119IPR009057Homeodomain-like
PfamPF002492.6E-172572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-232679IPR009057Homeodomain-like
CDDcd001675.84E-112772No hitNo description
PROSITE profilePS5129425.73473127IPR017930Myb domain
SMARTSM007172.5E-1677125IPR001005SANT/Myb domain
PfamPF002491.6E-1578123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2480126IPR009057Homeodomain-like
CDDcd001675.67E-1282123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVKNKGVRER GGNYKKNNGA AMVNRGAWTA EEDQKLVEYV MLHGDKKWRT LPAKAGLNRC  60
GKSCRLRWLN YLRPGIKRGN ISEDEEDLII RLHNLLGNRW SLIAGRLPGR TDNEIKNHWN  120
THLSKRSLTI DDLNLKLNHN LGLSHMHRDS SQGFAAAQLR GNIAEWLTTN DFEPANLSSE  180
LPKFEFDFET LFDFMPRTCD NQNVGGGGGG SSSELGVKDY AIIGHDGYMI NEDDGDGFFN  240
LNHFGDPPQI GALDQLTNFQ DYVLYYLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29251267107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084018.10.0transcription factor MYB57-like
TrEMBLA0A199V7380.0A0A199V738_ANACO; Transcription factor TT2 (Fragment)
STRINGXP_008778866.11e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17778510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-56MYB family protein