PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 319aa MW: 36552.7 Da PI: 6.0861 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114 | 9.9e-36 | 26 | 118 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g k+ll++i+ Aco017163.1 26 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKRGAKHLLSEIH 113 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ Aco017163.1 114 RRKSS 118 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-37 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-59 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.62E-34 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-31 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAFLVERCGE MVVSMDQSHK PVPAPFLTKT YQLVDDPCTD HIVSWGEDDT TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV ADRWEFANEF FKRGAKHLLS EIHRRKSSQP 120 SSHHYYHSPP PPPLPPPSSY NHHNPHPEDH MSISWINDPS ALLPPPAHSN VGHDHNNASE 180 FLSALSEDNQ RLRRRNSVLL SELTHMKKLY NDIIYFLQNH VTPISPRPSN CSSRILELGP 240 STQYHPPHPP HPPPPPLYRI RNCAMEIAEE EEEEEEEEEE ETDGGAVKLF GVPIHGKKRL 300 HEETATVPDE ESDDHGSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-22 | 22 | 118 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020107980.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107981.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107982.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107983.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107984.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107985.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107986.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Refseq | XP_020107987.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Swissprot | Q7XHZ0 | 1e-105 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | A0A199VKQ8 | 0.0 | A0A199VKQ8_ANACO; Heat stress transcription factor B-4b | ||||
STRING | XP_008794230.1 | 1e-118 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 3e-85 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Aco017163.1 |
Publications ? help Back to Top | |||
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