PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016984.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 309aa    MW: 34741.9 Da    PI: 6.5167
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016984.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-172875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
      Aco016984.1 28 KGSWTQDEDARLIAYIQKHGHGNWRALPKKAGLLRCGKSCRLRWINYL 75
                     799*****************************99************97 PP
2Myb_DNA-binding55.81.1e-1781125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+e+l++++++lG++ W++Ia+ ++ gRt++++k+ w+++
      Aco016984.1  81 RGNFTKEEEEKLIKLHNLLGNR-WSKIASFLP-GRTDNEIKNIWNTH 125
                      89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-241978IPR009057Homeodomain-like
PROSITE profilePS5129416.5482375IPR017930Myb domain
SuperFamilySSF466894.67E-3125122IPR009057Homeodomain-like
SMARTSM007176.1E-142777IPR001005SANT/Myb domain
PfamPF002496.8E-162875IPR001005SANT/Myb domain
CDDcd001672.61E-103075No hitNo description
PROSITE profilePS5129427.25276130IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2779130IPR009057Homeodomain-like
SMARTSM007179.7E-1780128IPR001005SANT/Myb domain
PfamPF002495.0E-1681125IPR001005SANT/Myb domain
CDDcd001673.99E-1283126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
RECASHYKYG WVMGRGRAPC CEKVGLNKGS WTQDEDARLI AYIQKHGHGN WRALPKKAGL  60
LRCGKSCRLR WINYLRPDIK RGNFTKEEEE KLIKLHNLLG NRWSKIASFL PGRTDNEIKN  120
IWNTHIKKKI ASKEASILSS SSTPRSRGLQ SEANRESESE HADRSLDTSS YSFDKLDARV  180
EPSINMSDMS RSSSSSSLAT NNHTGREEEA DATEGNSLAI PDVLIDPELI WSIMEGYDAK  240
MQSAQVGAEG KRFGKEGERS REWLEDIERE LMCDGPSCET EGDPISSYFQ MEPSSPSPLN  300
LHEVDMMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272613025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094532.10.0myb-related protein Zm1-like
SwissprotP200242e-80MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A199UK310.0A0A199UK31_ANACO; Myb-related protein Zm1
STRINGXP_008776690.12e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-63myb domain protein 58
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]