PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016980.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 446aa MW: 48578.1 Da PI: 4.6379

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.6	5.6e-35	40	132	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sw + +nsfvv+d+ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k ll++i+ Aco016980.1 40 FLSKTYDMVDDPATDAVVSWGNGNNSFVVWDPPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKPLLKTIN 127 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Aco016980.1 128 RRKAS 132 976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.2E-38	33	123	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.22E-35	35	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.5E-60	36	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.2E-30	40	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-19	40	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	79	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-19	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MEGAGGGGGG AGGGGAAAAV AAAAAAGANP SLNGNAPPPF LSKTYDMVDD PATDAVVSWG 60 NGNNSFVVWD PPEFARDLLP KYFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK 120 PLLKTINRRK ASHPPSQPHN NNASVAACVE VGKFGLDEEI ERLKRDKNVL MQELVRLRQQ 180 QQTTDHQLQT LGNRLQGMEH RQQQMMSFLA KAVQSPGFLA QFVQQNDSNR RIVSVNRKKR 240 RLPNQEGSPD GQIIKYQPLM NEAAKAMLRK ILNMDSPPCF DSSNSSDSLL LENFEGASST 300 TRNSGVTLAE VSSFSAEAQS PTINLADKNS PTVPGTSIPD FPELQNMVTD KNSTVDVPEK 360 SFVVPDPEGI YVNPNAAEED DVVPIELDGL LYDGDQKLPE IIDSFWEQFL ATSPLLGDSE 420 EVESSAQNME HLTEQMGLLS SDPRV*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MEGAGGGGGG AGGGGAAAAV AAAAAAGANP SLNGNAPPPF LSKTYDMVDD PATDAVVSWG  60
NGNNSFVVWD PPEFARDLLP KYFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
PLLKTINRRK ASHPPSQPHN NNASVAACVE VGKFGLDEEI ERLKRDKNVL MQELVRLRQQ  180
QQTTDHQLQT LGNRLQGMEH RQQQMMSFLA KAVQSPGFLA QFVQQNDSNR RIVSVNRKKR  240
RLPNQEGSPD GQIIKYQPLM NEAAKAMLRK ILNMDSPPCF DSSNSSDSLL LENFEGASST  300
TRNSGVTLAE VSSFSAEAQS PTINLADKNS PTVPGTSIPD FPELQNMVTD KNSTVDVPEK  360
SFVVPDPEGI YVNPNAAEED DVVPIELDGL LYDGDQKLPE IIDSFWEQFL ATSPLLGDSE  420
EVESSAQNME HLTEQMGLLS SDPRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	5	129	1	129	Heat shock factor protein 1
5d5v_B	2e-26	5	129	1	129	Heat shock factor protein 1
5d5v_D	2e-26	5	129	1	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665309	1e-177	KM665309.1 Ananas bracteatus clone 50408b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094868.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A199UK45	0.0	A0A199UK45_ANACO; Heat stress transcription factor A-1
STRING	OPUNC03G38490.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	1e-115	heat shock transcription factor A1E

Link Out ? help Back to Top
Phytozome	Aco016980.1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]