PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016928.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 311aa    MW: 31582.8 Da    PI: 4.6476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016928.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12173218555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Aco016928.1 173 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 218
                  99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-17166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-13166222No hitNo description
PROSITE profilePS5088817.39168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQPCSREMQA IAASLSAIGI QPLLGGVSGG DEFLEQMLAA APSAAWCDHM AEDPSPPPPP  60
PVATRYTPYD PIGGAAAAAT AAPASSAAEL GLFAPAIGDG GCEIDPSSSF KSLNPTGGEG  120
VYAGGFGGFL SVPAAQRTSM SFGITPTNAE ATVTTTAPKQ RVRARRGQAT DPHSIAERLR  180
RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSVSRLG GAAAAAPLVG  240
DLCSEGSGAG GGGGNETLTA ATEKKVAQMM EEDMGTAMQY LQGKGLCLMP ISLASAISSA  300
TSSPSVAADQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059192e-32AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149622e-32AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-32CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110849.10.0transcription factor bHLH66-like
TrEMBLA0A1U8JH162e-83A0A1U8JH16_GOSHI; transcription factor bHLH66-like
STRINGGorai.009G055200.16e-83(Gossypium raimondii)
STRINGEOY295797e-83(Theobroma cacao)
STRINGXP_008799645.11e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-42LJRHL1-like 2