PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco016902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 19637.1 Da PI: 10.1588 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+ ++ r +lg+f tae+Aa+a+++a++ + g Aco016902.1 14 TKFVGVRQRP-SGRWVAEIKG----TtQKIRMWLGTFETAEDAARAYDEAARIMCG 64 699*******.7******766....1346**********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-12 | 14 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-19 | 15 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.716 | 15 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.54E-30 | 15 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 15 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-34 | 15 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-8 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-8 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVTXAAAAAA TAATKFVGVR QRPSGRWVAE IKGTTQKIRM WLGTFETAED AARAYDEAAR 60 IMCGPRARTN FAYTANSASP PPNHPKFLSA ALTAKLHRLN LVSSLQSATA LQPMTAAAKD 120 AARRAQKKPA AAAVTKAKAA AAAAGTDSSA EVHFSYLEDR QHIEQMIEEL LDSNLYMELS 180 SSPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 16 | 78 | 6 | 69 | ATERF1 |
3gcc_A | 1e-13 | 16 | 78 | 6 | 69 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083529.1 | 1e-130 | ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A199VA96 | 1e-87 | A0A199VA96_ANACO; Ethylene-responsive transcription factor ERF003 | ||||
STRING | XP_008806298.1 | 6e-48 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr7P19320_001 | 3e-48 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco016902.1 |