PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016874.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 317aa    MW: 34845 Da    PI: 9.1716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016874.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-123177347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     rWT eE +l+ da +++ g+    W+++a+ ++ g+t  +++s+++++
      Aco016874.1 31 RWTREENKLFEDALARFEGDsqdKWEKVAAAIP-GKTVGDVVSHYRNL 77
                     9********************************.************97 PP
2Myb_DNA-binding46.39.7e-15142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Aco016874.1 142 PWTEEEHRLFLMGLQKYGKGDWRSISRNFVMTRTPTQVASHAQKY 186
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.9542782IPR017884SANT domain
SMARTSM007172.5E-82880IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-53078IPR009057Homeodomain-like
PfamPF002493.8E-93177IPR001005SANT/Myb domain
CDDcd001676.32E-83178No hitNo description
SuperFamilySSF466891.57E-103185IPR009057Homeodomain-like
PROSITE profilePS5129418.768135191IPR017930Myb domain
SuperFamilySSF466891.5E-17137191IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-18138189IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-13139185IPR009057Homeodomain-like
SMARTSM007175.8E-13139189IPR001005SANT/Myb domain
PfamPF002495.1E-13142186IPR001005SANT/Myb domain
CDDcd001673.43E-11142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MESWMEVLPP AATDPFLCST VGGFGPRRSC RWTREENKLF EDALARFEGD SQDKWEKVAA  60
AIPGKTVGDV VSHYRNLVAD VRQIEAGLVP FPGYNSSAPP FTLEWEKQPY SSCLLGVGGR  120
RSSSSSSSGR SSSDQERKKG VPWTEEEHRL FLMGLQKYGK GDWRSISRNF VMTRTPTQVA  180
SHAQKYFIRL NSGGKDKRRS SIHDITTVNL PDSRPQSPSQ PSILGAKSNL AAPPPMPGHI  240
SPTIDANKQH HEAANNAFNS CAHTTNKYSM QPSFGASPYG TKLHPQISQC GPLNDSMVGD  300
HSMLFQMQFS QPHSHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1432981177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6650602e-44KM665060.1 Ananas bracteatus clone 50154 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086210.10.0transcription factor DIVARICATA-like
RefseqXP_020086211.10.0transcription factor DIVARICATA-like
RefseqXP_020086212.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A199US120.0A0A199US12_ANACO; Transcription factor DIVARICATA
STRINGXP_008785419.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-76MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]