PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016776.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 844aa    MW: 92574.6 Da    PI: 6.2437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016776.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000646496861355
                  HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  R+ i +++ eLre++P+ a      K s  + Lek+++++  Lq
  Aco016776.1 649 RQMIQDRIKELREIVPNgA------KCSIDALLEKTIKHMLFLQ 686
                  77899************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-349179IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.671636685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-4649690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MSGFEMFSLR EVLRRLCAEI GWSYAVFWRA IGPSHRMLLV WEDGCCGHTS GILGSEASDL  60
LLEEHGLVQK LHNQQAAKYG SQTEESVNAL VRKTMMTQVH VIGDGIVGEA AFTGNHRWIV  120
RDSLKDYGSL SKDADEMNQQ FAAGIQTIVI IPILPRGVLQ LGSTQMLMEN VGFLIHTKNL  180
LSQLNNRSGS SFSRLSLDTN PSFVEPILHC SRQLEGETVG ARVYTKANLS LGKQGVTNDN  240
GSKIQTQPSV MDSDFTSRLT SLEEQLLFMS HDGLLEPGNN AGSAVQGTGA VRLILNGRDN  300
PNLLEDSNIV SPHLQNKLLN TVDSLGKFGS LLHGSNEITR VLCANSSGTG TSQMIDQRYN  360
NAESSQQNQP SSPYRVTQAV PIEGNEGRHE NDLVEAAGLR RSIQNDRQTR SIANSIANES  420
NKIYATENGN GVKDENDCKL SHIRTEKTSL LPLDRSMESD LFDMLGPKFR QFHDGSDNSL  480
GINAFIHSIK SDASPAFDSA NDDFSQSGIF SVADTDQLLD AIVSSINPTA KQNSDDSISC  540
KTSQTDIHNS ACYGGYAPSS EVKQDELSYL PPVPIKNETA ISSYVKPQCS HPQSTGVHKS  600
QIHLWLESGQ NMKCDSMPAS NSKKLDITGK ANRKRSRPGE SPRPRPKDRQ MIQDRIKELR  660
EIVPNGAKCS IDALLEKTIK HMLFLQSVTK YADKLKEKGE CKIVDKDGGL LLKDCYEGGA  720
TWAFDVGSQS MICPIIVEDL NQPRQMLVEM LCEERGFFLE IADFVKGLGL TILKGVMEAR  780
KSKVWARFVV EANRDVTRME IFLSLVRLLE QTAGGGIIPM NVNNVDATHT LLCQPSSIPA  840
TGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6661153e-82KM666115.1 Ananas bracteatus clone 51351b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106963.10.0transcription factor LHW-like
TrEMBLA0A199W5Z10.0A0A199W5Z1_ANACO; Transcription factor LHW
STRINGXP_008799711.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.18e-45conserved peptide upstream open reading frame 7