PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016689.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 557aa    MW: 61079.4 Da    PI: 4.7891
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016689.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.46e-301162302103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.............XTTSEEEEESX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.............kekiweFkhks 85 
                   Fl+k+y+i++d++l+ ++sw  +g+sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+Y  + v++  ++ +              + + weF+++ 
   Aco016689.1 116 FLSKTYDIVDDSSLDPVVSWGPTGKSFVVWDPVEFARAVLPRHFKHNNFSSFVRQLNTYVESTVHRIGGDWSVgvglvflqgfrkiEADRWEFANED 212
                   9**********************************************************99999888877555899998888776559********* PP

                   XXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  86 Fkkgkkellekikrkkse 103
                   F kg+k ll++i r++s+
   Aco016689.1 213 FLKGSKGLLKNIIRRRSS 230
                   ***********9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-30112227IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-48112227IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-33113227IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-27116227IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-14116139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-14154166IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-14167179IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEPSDKKPCP PATPTHSTSS SSSSSSALMG TRYRYLASTV DLPISSPSHF LAHPSSPSPL  60
LPIKPKIEPP GDILEFPSFS PPSVPPTSLR GEAGEGEATD VPRPLEALQG TPIPPFLSKT  120
YDIVDDSSLD PVVSWGPTGK SFVVWDPVEF ARAVLPRHFK HNNFSSFVRQ LNTYVESTVH  180
RIGGDWSVGV GLVFLQGFRK IEADRWEFAN EDFLKGSKGL LKNIIRRRSS QVQQVSTQIG  240
SSELASPAVE GELHTLRREK HTLMQEVAKL KQEHITTIQQ VSALNQRLQS AEEKQKQMVS  300
FLAKLLKNPE FLACLKQQKE QKRIALPRPK RKFLKHQEVV CSDFLEAVTQ QSGEDILEIT  360
APASSYGLQE LTGVLAETGE EFGTLFLESD AAAFKNENLE SAQTDIGAQY SVSFPVDIDP  420
DKALQGTVFP PSSRAGSDPT IADPKGKNVI DLKLDVASSV SEYLISFPED SSFENTWSVG  480
LGAGESFLSS DYTIWDSIGH DFQQLEVGAE PGTPWDLDLQ ALEEQLVSEN SVHDDSPSHE  540
KGNQRAVNRN TENMEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-2111323017123Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6616891e-133KM661689.1 Ananas bracteatus clone 44426 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107344.10.0heat stress transcription factor A-3-like
TrEMBLA0A199VJT90.0A0A199VJT9_ANACO; Heat stress transcription factor A-3
STRINGXP_008775120.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-74heat shock transcription factor A3