PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco016654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | B3 | ||||||||
Protein Properties | Length: 205aa MW: 23429.5 Da PI: 9.5515 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 88.9 | 4.2e-28 | 27 | 135 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kv tpsdv+k++rlv+pk++ae+h g + +++ l++e ++gr W+++++y+ +s++yv+tkGW++Fv++++L++gD v F Aco016654.1 27 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqqqqrqqpgrvG--EGKGVVLSFEEeRTGRLWRFRYSYWSSSQSYVMTKGWSRFVREKRLRAGDAVSFA 122 99*************************99888776665332..348889999997889**************************************** PP E-SSSEE..EEEE CS B3 84 ldgrsefelvvkv 96 + +++l++++ Aco016654.1 123 HAVGARGRLFIRW 135 8755777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-36 | 22 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-27 | 25 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.66E-20 | 26 | 134 | No hit | No description |
SMART | SM01019 | 2.4E-19 | 27 | 137 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.281 | 27 | 139 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-24 | 27 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKEEEEEEHD RNDITGLSNY VETELMFEKV VTPSDVGKLN RLVIPKQHAE KHFPLQQQQR 60 QQPGRVGEGK GVVLSFEEER TGRLWRFRYS YWSSSQSYVM TKGWSRFVRE KRLRAGDAVS 120 FAHAVGARGR LFIRWATRAG PRGPAAVLQR ASFVPAWEYY YRNHPTGGQG GPTKRLRLFG 180 VNLECPNSEC ADTDEPSYII PLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-45 | 23 | 140 | 10 | 119 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020094561.1 | 1e-151 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | Q7F9W2 | 1e-47 | Y4814_ORYSJ; B3 domain-containing protein Os04g0581400 | ||||
TrEMBL | A0A199W5B7 | 1e-149 | A0A199W5B7_ANACO; B3 domain-containing protein | ||||
STRING | GSMUA_Achr1P03600_001 | 3e-50 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 4e-47 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco016654.1 |
Publications ? help Back to Top | |||
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