PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016649.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 699aa    MW: 77282.2 Da    PI: 9.4709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016649.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
      Aco016649.1 24 REKWTEEEHNKFLKALKLYGRA-WQRIQEHIG-TKTAVQIRSHAQKF 68
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-161874IPR009057Homeodomain-like
PROSITE profilePS5129420.821973IPR017930Myb domain
TIGRFAMsTIGR015572.6E-152271IPR006447Myb domain, plants
SMARTSM007171.0E-132371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-92464IPR009057Homeodomain-like
PfamPF002491.2E-132467IPR001005SANT/Myb domain
CDDcd001672.55E-102669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
METCSAGEDI TAKRRKPYTI TKQREKWTEE EHNKFLKALK LYGRAWQRIQ EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALTKG TPVGQSHDIE IPPPRPKRKS TCPYPRNTAA GSLSPLEEAN  120
DGKALHSTPL RSGKQVLCVD VDTSHEKLPA TEAHQRKKQP SEAGSSSEVF HLCQVAPGAS  180
ISSANKSSSN TCTFKHYIPL VEGGDEKTAQ SETSQNFQEK QEQVKSASYT DADNHGQNGV  240
YVNWKEKLTY KKKLDVREQR TIRGPLLNND LRGAQCYSKH VPEQFMSRKN NESSKQSNFS  300
GNYAPTKTDV QVNTSQTNPT TVPEHNHNMN STTMPSADQP CSVFVPFTQS GSNQDASRTF  360
LSPSSSSLMV SNLLHNPAIH AVASLAASYW SSNNSNASSS STLENNGAVP NAQVNSSPSM  420
VAMAAATVAA ASAWWTSNGL LPLFPPVQPA FIFPPMQTMP ISAMDMTRAP EHKEEKKDDR  480
GHKLTQHNAV SKALSSESDE SRRDETLRQA ALKSMITNKP KSRLHDSDKA ALRTPIRSSN  540
GSNTPSSGDV ETDGMKRKLQ REVKDKDEQI HLVKNHLPEE TSNYQNSSKE MLDDSRKGRP  600
ASLELFTGEN LRKIPSLPPQ SEDKEATALM VDLIGEAFRL STKVTAEPEE HSKMNEIERV  660
KLKSSRRAFK PYKRCSVEVD NQATTNEDSS DKRLRLGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094189.10.0protein LHY-like isoform X3
TrEMBLA0A199UI340.0A0A199UI34_ANACO; Protein CCA1
STRINGXP_008808259.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.41e-43MYB_related family protein